Daucus carota (carrot): 108209116
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Entry
108209116 CDS
T05350
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108209116
03015 mRNA surveillance pathway
108209116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108209116
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108209116
5.6.2.5 RNA 5'-3' helicase
108209116
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108209116
mRNA cycle factors
Common to processing body (P body) and stress granule
108209116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
UvrD-helicase
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
108209116
NCBI-ProteinID:
XP_017235353
LinkDB
All DBs
Position
2:56355282..56368501
Genome browser
AA seq
1254 aa
AA seq
DB search
MDSQSNNLYDTASQPDIGNDAYTFLEFNTHADDDDFDYPEFHELSQPIRGSAWPTPSDSV
AEANLSDHHSDASPGSGNGGKSRGGGSSNQAAVEAIAAGMSGLTFEETGDDDSYEFGKGD
FTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGSTSGSHIVNHLVRAKHKEVCLHKDSP
LGETILECYNCGCRNVFLLGFISAKAESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDD
RCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKSNPDATLEDLEKPGVDDEPQPVALK
YEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTIRWDIGLNKKRIAYFVFPKEDNELR
LVPGDELRLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRASQGVPVDVNHGFSVDFVWK
STSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQV
FAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA
TGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKK
YKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQSTEPECLIPLVLGV
KQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSN
SFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVE
KIVTTFLKSGVIPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREK
DYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKE
HECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGMMPNDSFGSADAERRNSRSRGS
FMPPGPPNGTHKPGLHPAGYPMPRVPITPYHGGPPQPYAIPARGAVHGPVGAVPHLPQQG
SRGFGAGRGSAGAPIGNHLPHQQGSQQAVGSVGSNFNYPTLEGPSSQPSPGGPLSQPSYV
SNMTVQPNQSFRDGFSVGGMSQDFLGDDFKSQGSHVPYNVADFSTQASQSGYTVDYATQG
GQGAFPSSFLNQNSQAGYSRFGSGNEFMSQDYLAHGSQGLFTQAGFSDPSQEDVSHSHFG
LGNASQLQSQALLNPLYSQTFTNYNTQPHNMQAPQPQQGQPGQGSQNQKNQYSS
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atggactctcaatcaaacaacctatacgacaccgcatctcaacccgacatcggcaacgat
gcctacactttcctcgagttcaatacccacgccgatgatgacgacttcgattaccccgaa
tttcacgagctctcccagccaatccgcggctccgcgtggcccacaccttccgactccgtt
gccgaagcgaatttgtcggaccatcactccgacgcctcgccgggctccgggaacggcggg
aagagtagaggaggcgggagtagtaatcaggcggcggtggaggcgatagcggcggggatg
agtggattgacgtttgaggagactggtgatgatgatagttatgagtttgggaaaggcgat
tttacggagcacgcgtgtcgttattgtggagtgcagaatccggcgtgtgttgttaggtgt
aatgtgccttcttgtaggaagtggttttgtaattcgagagggagtacctcggggtcgcat
atcgtcaatcatctggtgcgggcaaaacataaagaagtttgtcttcataaagacagtcca
ttgggagagacaattttagagtgttacaattgtggatgtcgaaatgtgtttcttctaggt
ttcatttccgccaaagcagagagtgttgttgttctactttgcagggagccctgtcttaat
gttaatgcattgaaggacatgaattgggacttgagtcaatggtgcccacttattgatgac
cgatgtttcctacagtggcttgttaaggtaccctctgaacaggagcagttgagagcacgg
cagataagtgctcaacagattaataaggtagaagaactttggaagtctaatcctgatgct
actctggaagatcttgagaagcctggtgttgatgatgaaccgcaacctgttgctttgaag
tatgaggacgcatatcagtatcaaaatgtcttcgcgccactgattaagctagaagctgat
tatgataaaatgatgaaagaatctcaaagcaaagacaatctcactatacggtgggatatt
ggtttaaacaagaaacgtatagcatacttcgtgtttccgaaggaagataatgaattgcgc
cttgttcctggggacgagttacgactgcgttattcaggtgatgctgctcatccagcttgg
cagtcagtgggtcatgtggtaaagttgacagcacaagaggaggtggctcttgaactccga
gcaagtcagggagttcctgtcgatgtgaaccacgggtttagtgttgattttgtttggaag
agcacaagttttgataggatgcagggtgcaatgaaaacttttgctgtggatgaaacaagt
gttagcgggtacatttatcaccatttgttaggtcatgaagttgaggttcaaatggttcgt
aatgccctgcctcgtcgttttggcgctccaggacttccggaacttaatgcttctcaagtt
tttgctgttaagagtgtacttcaaaagccaataagtttgattcaaggtccacctggcaca
gggaaaactgtcacttctgcagcaattgtttatcatatggccaaacaagggcaggggcag
gtcttggtttgtgccccaagtaatgtggctgtggaccaattggcggagaagataagtgct
actggcttaaaggttgttaggctttgtgcaaaatcgagggaagctgtaagttctcctgtt
gagcatctaacccttcattatcaggtcaggcatctggatacctctgaaaagagtgaactt
cacaagttacaacaactgaaagatgagcaaggagaactgtccagcagtgatgagaaaaaa
tataaggctctaaagcgggcaacagagagagaaatttctcaaagtgctgatgtcatatgc
tgtacctgtgttggtgctggtgatcctagattatcaaattttcgattccggcaggtccta
attgacgagtctacgcaatcaactgagccagagtgtttgattccattggttcttggagta
aagcaggttgttcttgttggtgatcattgccaacttggtcctgtcataatgtgcaaaaaa
gcagctcgtgctggacttgcacagtctttgtttgagcgtctggtgctactaggtgtaaaa
ccaatcagattgcaggttcaataccgtatgcatccatccctttctgaatttccgtcgaat
agcttctatgaaggtacccttcagaatggagtcacaataaatgaaaggcaatcgacaggc
attgatttcccctggcctgtaccaaatcggcctatgttcttttacgtgcagatgggacaa
gaggagataagcgctagcgggacttcctatctgaacaggactgaagctgcaaatgttgaa
aaaattgtgacaacttttttgaagagtggtgtaattcctagtcagataggagtgataaca
ccgtatgaaggccagcgcgcatacattgtcaactacatgtcaagaaatggtgctttaaga
cagcaactttacaaagaaattgaggtggctagtgtagattcttttcaagggagggaaaag
gattatattatattatcatgtgtgagaagtaatgaacatcagggtatcggatttcttaat
gatccacgaaggcttaatgttgccctcactcgtgcccgttacggcattgtcatcctgggc
aatccaaaagttcttagcaaacaaccactttggaatggcttgctgacacattataaggag
catgagtgtttggtggaaggacctttaaataatttgaagcagagcatggtgcagtttcaa
aagcctaaaaagatttacaatgatcggagacttttctttggcggtggacctggaatgatg
cctaatgatagttttggatctgcagatgctgagaggagaaatagccgttctaggggctct
ttcatgcctcctggcccacccaatggcacgcataaacccggtctgcatccagctggttat
cccatgcctcgtgttccgattacaccttatcatgggggccctccacagccatatgctatt
cctgcccgtggtgctgtacatggacctgttggagctgttcctcatcttcctcagcaggga
agtcgaggttttggtgctggacgtggcagtgctggcgctcccataggcaatcatcttcca
caccaacaaggctctcagcaagctgttgggagtgttgggtctaatttcaattatcctaca
ttggagggtccaagtagccagccatctcccggtggtccattgtcgcaacctagttatgtt
tctaatatgactgttcaaccaaaccaatcatttcgggacgggttctctgttggcggaatg
tctcaggatttcttgggagatgattttaaaagccaggggtcacatgttccatataatgtg
gccgatttctctactcaggcttctcaaagtggatatactgttgattatgcaacacaggga
ggacaaggtgcgtttccgagtagcttcctgaatcagaattctcaagcaggatattctcgc
tttggttcaggcaatgagttcatgtctcaggattacctggcccatggttcacagggcctc
tttacgcaggctggattcagtgatccttcacaagaagatgtttcacatagccactttggc
ttgggcaatgctagtcaacttcaatctcaggcactgttgaatcctctttattcccagact
ttcaccaactacaatacacagccgcataacatgcaagctccacaaccgcaacaaggccaa
cctggacaagggtcccaaaatcagaaaaatcagtatagtagttga
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