Daucus carota (carrot): 108209638
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Entry
108209638 CDS
T05350
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X2
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108209638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108209638
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108209638
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108209638
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108209638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
108209638
NCBI-ProteinID:
XP_017236137
UniProt:
A0A166F3F9
LinkDB
All DBs
Position
2:55093086..55100105
Genome browser
AA seq
986 aa
AA seq
DB search
MDQLRYISSSTENSRNLGLAKKPMANDYLIQKPMTPIIDRFKAMLRGREENIKALGLHGG
EDDDDPISPPRCEEIVKLYEIVLSELTFNSKPIITDLTIIAGEQREHAEGIANAICDRIL
QAPIDQKLPCLYLLDSIAKNIGKEYVRCFSALLPEVFCEVYKQVNSSLRTSMGHLFGTWS
TVFPPSILCKIEAETNFAPAANSQSVLTSLQPSESPRPTHGIHVNPKYLEARRQYEHATV
QSDIPHSSGNSSLKMNGKHAVEHGGYGSDNSEGVPTQVGTKRINSSIRTNITNAENMLAP
ARGAKSSSPFVAGRVRSPGSDTEFDSTSRFLKISSPSRRGFDYGGVVNIGKKESSDRYGG
YKSLDSHQEYDYHDSHSYSNSELRGPRALIDAYGTDERDTCKHPNAGHLNMNAVNNKMAV
QTWKDNEEEEFKWEDMSPTLATGNLKSSLFSQSNPMSGILTTVPGVEPQHPVLMENSFRR
GHQSGREQMSAFSDSSQITDSVHGLTNNIYGVRNEGSQFPTSRNPPEVWNIPPSSQRNLQ
VPFISSAGELKIPPVNGFPGLDKERGSLDFASRMSSLTRESLNPEVLSAQKSNPVSQLAS
YPLQKRMWSQMEPVSAGYSNADQGMKNSFSAPNHQAQFSNRQVGPNSLHQQNHTQNVVLR
PPYQMRPNVQQNMIPPVGMSTPSQVAYQPFGRGYAPPGQRPFVNTGFMNPAPGMQSSMPI
LNVRNSPAHLPGVGLPPLPPEPRPVSSQMIPTQNPSLVALNPSGGGALSGLFNSLMAQGL
ISLTNQASVQDPVGLEFNTDLLKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDW
HVTRNRTSKNRKQKPSRRWFVSADMWLSGTEALGADAAPGFLPTEIVHEKDDEESAVPAD
EDQIVCALCGEPFVDFYSDETEEWMYKGAAYMNAPAGSTAGMDRSQLGPIVHTKCKSDSN
VTTAEDSRKNEMVYTEDGGRMKRLRV
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggatcaattgaggtatatttcatcgtcgacggagaattcaagaaacctagggttagct
aagaagccaatggcgaatgattacttaattcagaagccgatgacgccgattatcgatcga
tttaaggctatgctgagaggcagagaggaaaatattaaggctttaggtttacatggtggt
gaggatgatgatgaccctatttcgcccccgagatgcgaagaaatcgtcaagttgtatgag
attgttttgtctgagcttacgtttaattcaaagccgattattactgatcttacgataatt
gctggtgaacaaagagagcatgctgagggcattgctaatgcaatttgtgaccggattctt
caggccccaattgatcagaaactgccttgcttgtatcttttggatagtattgctaaaaat
attggtaaggagtatgtaagatgcttctcggcacttctccctgaggtattctgtgaggtg
tacaaacaagtcaactcaagtttgcgcacatctatgggacatttgtttggtacttggtca
actgtgtttccaccctctattctatgcaagattgaggctgaaacgaactttgctccggct
gcaaattctcaatccgttttgacttccttgcaaccttctgaatctccgcgaccaactcat
ggcatacatgttaatccaaaatatttggaagcaaggcgtcagtatgaacatgcaactgtt
cagagcgacattccacattcaagtggaaattcatctttaaagatgaatgggaagcatgct
gttgaacatggtggatatggctctgataattctgagggtgtaccgacacaggttggaaca
aaaagaatcaactcaagtattcgaactaacataactaatgctgagaacatgcttgctcct
gctaggggggcaaagtcctcttcaccgtttgttgctggtcgtgttagatcaccaggttca
gatactgagtttgattcaacaagtaggtttcttaaaatctcctcaccatcccgtcgtgga
tttgattatggaggtgtagtgaatattggcaaaaaagagtcaagtgaccggtacggaggt
tacaagtctctcgatagccatcaggaatatgattatcatgattcacatagttacagtaac
agtgagcttcgagggcctagagctttgattgatgcatatgggactgatgaaagggatact
tgtaagcatccaaatgccggacacctgaatatgaatgctgttaataacaagatggctgtg
cagacatggaaggataatgaagaagaagagttcaaatgggaagatatgagtccaacatta
gctactggaaacttgaagtccagtttgttctcgcaatctaatccaatgtcaggaattctt
accacggtacctggagttgagcctcaacacccggtccttatggagaatagtttcaggaga
ggccaccagtctggtcgagaacaaatgtctgcattcagtgattcatcccaaattactgat
tctgttcatgggctgaccaataacatatatggggttcgtaatgagggatcacagtttccc
acttctcgcaaccctccagaagtctggaacatcccaccatcctcccaaagaaatttacag
gtaccttttatatcatcagctggtgaactaaaaattcccccggttaatggctttccaggc
cttgataaagaacgcgggtccttggactttgcgtcaagaatgagttctcttactcgagaa
agtttgaatcccgaggttctttctgcacaaaaatccaatccagtatctcaattagcttca
tatccattgcagaaacgtatgtggagtcagatggaaccagtgagtgctggttattcaaat
gctgatcaaggtatgaaaaattcattttcagctccgaatcaccaggcccagttttctaat
cgccaagttggaccaaattctttacatcagcaaaatcatacacaaaatgttgtcttgcgt
ccaccatatcaaatgcgtccaaacgtacagcaaaatatgattccacctgttggaatgtca
acgccatcccaagtagcataccagcccttcgggcgtggatatgcaccgccaggacagagg
ccatttgtaaataccggcttcatgaatccagctcctggcatgcagtcatctatgccgatt
ctcaatgtccgaaattcacctgcacacttaccaggggttggattgccacctctacctcct
gaacctcgccccgtctcatcacaaatgatacctacccaaaatcctagtttggttgcactc
aacccttctggcgggggtgcactttcagggttgtttaattcgttgatggcccaaggtttg
atctcattgacaaaccaagcatcagtgcaggatcccgttggactggagttcaacactgac
cttcttaaggtgcgtcatgagtctgccatcagtgctctctatgctgatctccctaggcaa
tgcacaacttgtggtcttcggtttaagtgccaagaggagcacagcagtcatatggattgg
catgtaacaagaaataggacttcgaaaaaccgtaaacagaaaccttctcgtagatggttt
gtaagtgctgacatgtggcttagtggtacagaggctttgggagctgatgctgcaccagga
tttttacccactgaaattgttcatgagaaggatgatgaagaatcagccgttccagcagac
gaagatcagattgtttgtgcactatgtggggaaccatttgttgatttttacagtgacgag
actgaagaatggatgtataagggtgccgcatatatgaatgcaccagcaggatcaacagct
ggaatggataggtcccagttgggtccaatcgtgcataccaagtgcaagtctgactctaat
gtgaccactgctgaagactcgagaaaaaatgaaatggtatatactgaagatggtggtcga
atgaaacggttgcgggtttag
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