Daucus carota (carrot): 108214377
Help
Entry
108214377 CDS
T05350
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2
KO
K11644
paired amphipathic helix protein Sin3a
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108214377
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
108214377
REST complex
108214377
Heterochromatin formation proteins
Other heterochromatin formation proteins
108214377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
Motif
Other DBs
NCBI-GeneID:
108214377
NCBI-ProteinID:
XP_017241836
LinkDB
All DBs
Position
3:47925842..47935859
Genome browser
AA seq
1320 aa
AA seq
DB search
MKRFRDDYVNSQFKRSFGSSRAEPYAQPHVAGGGSAGPASQRLTTNDALSYLKEVKDMFQ
DQREKYDTFLDVMKDFKAQRIDTTGVIARVKELFKGHNNLIFGFNTFLPKGYEITVIEEG
EAPPKKTVEFEEAISFVNKIKKRFQNDDDHVYKSFLDILNMYRKEHKGIEEVYHEVAALF
DDHPDLLDEFIRFLPDASAVASAHNASLGRQPLNRYDERSSAVLTQRGTPMDKQRFQRDR
IIGPHTENDPNLEHPDLDEKTMIKLHKEQRRRSENNNRDRRMNRDQDFRDSEQDMHRSSE
KRKSSRKVDGFGGDHFSGPYDDKDALKSIYKQEFIFCEKVKERLRNPADYQAFLKCLHIY
STDIITRNELQGLVADLIGKDTALMEGFKEFLELCEGTDGFLAGVMSKKHFWTEGFASKT
LKVEDKEREHRRDVDLFKERDRVKEKYWGKSIQELDLVNCQRCTPSYRLLPDDYPIPLAS
QKSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVTATAK
RAEELLNIMNKNSINSESTICVEDHFTALNFRCIERLYGDHGLDVLDILRKNTSLSLPVI
LIRLKQKQEEWSKCRLDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEVKE
LKEKRKQEDSVLLNISAGCRHPITPDLKFEYSDVEIHEDLYKLIKYSCDEICATKEQSKK
AMRLWTTFLEPMLNVPSRPLEPEDSDAQSDGTDIKEKYGSPSAANPAAMDVEEAKTLPNG
DVLPDPMQSSNACMLSGEVSVEGDGGGLQKALDRATVNGTSTCAELLGSSDATVRAGNDV
AQRPGIHVNENGQGLVCEINNMHHQDVLRSVTSATVSGVPTDVPNVPNCKEDLVDVSMVE
KEEGELSPNGDFEEDASVAERSAETTRHEARTGEDTSCQHVRENDADADDENSENVSEAG
EDVSGSESAADEHSREEEDGDHDENDCKGESECEAEGLDDAVTEEDGLLSPPSDRFVLTS
KPLAKRVASALRDTAKGSKVFYGNDAFYVLFRLHQILYERLLFAKTHSSSGEPKMRNVID
ACPADLYSRFLSALYDLLDGSSDNAKFEDDCRAIIGNQAYVLFTLDKVIYKIVKQLQTVA
SDEMDSKLLQLNEYENFRKPDKYIDSVYYENAHVLLHDENIYRFECTSVRSHLSIQLMDD
GNEKKEVVAVSMDPNFVAHLNNEFLPIPINKESDRIILQRNKRMCANHDEYSTIGIAMED
VKVVNGLECKMACSSSKISYVLDTEDLIYRDRRNKRKLSPLSNEAEARVQKFRRFLTASI
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggtttcgagatgattatgtgaattcgcaatttaagcgctcgtttggttcttct
cgtgctgagccatatgctcaacctcatgttgctggagggggtagtgcaggtcctgcatcg
cagagacttacaaccaatgatgcattaagttatttgaaagaagtcaaggatatgtttcag
gaccagagggaaaaatatgacactttccttgatgtgatgaaagattttaaggctcaaaga
attgatactactggtgtcatcgcgagggtgaaagaattgtttaaagggcacaataatctc
atttttggtttcaatacatttttacccaaaggctatgaaattactgttattgaggagggt
gaggcaccaccgaagaaaactgttgagtttgaagaggctataagttttgtaaacaagatc
aagaaaagatttcaaaatgatgatgatcatgtgtacaaatcttttttagacatattaaat
atgtacaggaaggagcacaagggtattgaggaggtctaccatgaggttgctgcacttttt
gatgatcatccagatttgcttgatgagttcataagatttttacctgatgcttcagcggtt
gcgtcagcacacaatgcttcacttggcaggcaaccattgaatcgctatgatgagcggagt
tctgccgttttaacacagcggggtacaccaatggataagcaacgctttcagcgggacaga
atcatcggtccccacactgagaatgatccgaatcttgagcatccggatttggatgaaaaa
acaatgatcaagttgcacaaggagcagagaaggcggtctgaaaataataaccgtgacagg
aggatgaatcgtgatcaagattttagagactctgagcaagacatgcatcgttcatctgag
aaaaggaaatcttctcggaaggtggatggatttggaggggatcatttctcgggtccttac
gatgataaagatgccttgaaaagtatctataagcaagagttcattttctgtgaaaaagtg
aaggagagactacggaatccagccgattaccaggcattcctgaagtgtcttcatatctat
agcactgacataataacaagaaatgagttacagggcttggttgcagatttaattggaaaa
gacaccgctcttatggaagggtttaaggagtttttggaattatgtgaaggaactgatgga
tttcttgctggtgtgatgagcaaaaaacatttctggactgaagggtttgcatccaaaact
ctgaaggtagaggataaagaaagggaacatcgacgtgacgtagatttatttaaagaaagg
gacagggtgaaggagaaatattggggaaaatccatacaagagctggatcttgttaattgt
cagcggtgtactcctagttacaggcttcttcctgatgattatccaataccattggcaagc
caaaagtcagagctgggagcacaggtactgaatgatcactgggtatctgtgacgtcaggt
agtgaggattactctttcaaacatatgcgcagaaaccaatatgaagagagtctgtttaga
tgcgaagatgataggtttgagctggatatgttgttggaatctgtgactgcgactgctaag
cgcgcggaggagttactgaacatcatgaacaaaaattccatcaattcagagagtaccatc
tgcgtggaagaccacttcacagccctcaattttaggtgcattgaacggttatacggtgat
catggactggatgtcttggacatcttacgtaaaaatacatctctttctctgcctgtcata
ttaatacgcctgaagcagaaacaagaggagtggtcaaagtgccggctagatttcaataaa
gtttgggctgaaatctatgcaaagaaccattacaaatcccttgatcaccgtagtttctat
ttcaagcagcaagattcgaagaacttgagcacaaaatcattagtaactgaagttaaagaa
ctaaaggagaaaaggaaacaggaggatagtgtgcttctcaacatatctgctggatgcaga
catcctataactccagatcttaaatttgaatactctgatgttgagattcatgaagactta
tataagcttataaagtattcatgtgatgagatttgtgcgactaaagagcagtctaaaaag
gccatgaggctttggactacatttttggagccaatgttgaatgttccttcgcggcctctt
gaacctgaggattctgacgcacaaagtgatggaacagacatcaaagaaaaatatggaagc
cctagtgctgctaatcctgcagctatggacgtagaagaagcaaaaactttgccaaacgga
gatgtgttaccagatccaatgcaatctagtaatgcttgcatgttaagtggagaagtatct
gttgaaggtgatggaggtggtttacaaaaagctctagaccgtgcaactgtcaatgggaca
tctacttgtgctgagcttttaggcagttcagatgcaactgttagagcagggaatgatgta
gctcagaggcctggtatccatgttaatgaaaatggtcagggccttgtttgcgaaatcaac
aacatgcaccatcaagatgttttgagatcagtcacatctgcaaccgtgagtggagttcca
acagatgtccccaatgtgcccaactgcaaggaagatttagttgatgtttccatggtcgag
aaagaagaaggtgagctgtcacctaatggtgattttgaagaggatgcttctgttgcagag
agaagtgcagaaactacaaggcatgaggcaaggactggtgaagacacctcttgtcagcat
gttagggagaatgatgccgatgctgatgacgagaacagtgaaaatgtttctgaggccggc
gaagatgtttcaggcagtgaatcagctgctgatgagcactcccgtgaagaggaggatgga
gaccatgatgaaaatgattgtaaaggtgaaagtgaatgtgaagctgaggggttggatgat
gcagtcactgaagaagatggacttttatcaccaccatctgaccggtttgtgctaacctca
aagcctctggcaaagcgtgttgcatctgcattacgtgatacagcaaaaggttccaaggtt
ttctatgggaatgatgcattttatgtgcttttccgtcttcaccagatattgtatgaaaga
ctgttatttgccaagacacattcatcttctggagaaccaaaaatgagaaatgtgattgat
gcttgtccggctgatttatattccagatttttgagtgcattatatgatttgcttgatgga
tcttctgataatgcaaagtttgaggatgattgccgggctataattggtaatcaggcttat
gtgctgtttactttggacaaagtgatatataagattgtcaaacagcttcaaactgttgca
agtgacgaaatggatagtaagctgctacaattgaacgagtatgaaaattttcggaaaccg
gataaatatattgattcagtctattatgaaaatgcacatgtccttctccatgatgaaaac
atataccgatttgaatgtacatctgtccggtcacatttgtctatacagctcatggatgat
ggaaatgaaaagaaagaggtggttgcagtatccatggatcctaattttgtagctcatctt
aataatgaatttttgccgattcctatcaataaggaatctgacagaattatattgcaaagg
aataagcgcatgtgtgccaaccatgatgaatattctactataggcattgctatggaagat
gttaaagtggtcaatggcttagagtgcaagatggcttgtagctcatccaagatatcctat
gtcctagacacagaagatctcatttaccgcgacagaagaaacaaaagaaaattgtcccca
ctgtctaacgaggctgaggcaagagtgcaaaagttccgccgtttcttgacggcttcaata
tga
DBGET
integrated database retrieval system
