Daucus carota (carrot): 108215530
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Entry
108215530 CDS
T05350
Name
(RefSeq) histone deacetylase 19
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
dcr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108215530
03083 Polycomb repressive complex
108215530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108215530
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
108215530
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
108215530
HDAC complexes
Sin3A-HDAC complex
108215530
BRAF-HDAC complex
108215530
REST complex
108215530
SHIP complex
108215530
MiDAC complex
108215530
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
108215530
Heterochromatin formation proteins
Other heterochromatin formation proteins
108215530
Chromatin remodeling factors
NuRD complex
108215530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
108215530
NCBI-ProteinID:
XP_017243498
UniProt:
A0A165YV85
LinkDB
All DBs
Position
4:46158684..46163818
Genome browser
AA seq
498 aa
AA seq
DB search
METGGNSLPSGSDGTKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMH
VLKPIPARDKDLCRFHADDYVSFLRGITPETQQDQARQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHGNCDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKVHERVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGHASGKYYSLNVPLDDGI
DDESYQSLFKPIMGKVMEVFRPGAVILQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGIELEDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSRQILDDIKAKLLDNLSKLQHAPSVPFQERPPDTEFPEADEDQDEDGRWGRESEMDVD
DQRKPFSGRVKMEIFEPEQKEAVDAREGEHARGMDATFTETASLKASNPISISMDGMHIN
SEQGNASKQSDGPADMDP
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggaaactggagggaattctttaccatctggttcagacgggacgaaaagaaaagtttcc
tatttctatgatccagaagtcggcaattattattatgggcaaggccatcctatgaagccc
cacagaatccgtatgacgcatgctcttttggctcactatggtttactgcagaacatgcac
gttctgaagcccattccagctagagacaaagatctttgcaggtttcatgctgatgattat
gtgtctttcctgaggggaatcactcccgaaacacagcaagatcaagcgagacagctgaaa
aggtttaatgttggcgaagactgccctgtctttgacggtctctattccttctgccaaaca
tatgctgggggctcagttggcggtgctgttaaactaaaccatggaaattgcgatattgct
ataaactggtctggtggacttcaccatgccaaaaaatgtgaagcttctgggttctgctat
gtgaatgacatagttcttgcgatcttggaacttcttaaagtgcacgagcgtgttctatat
gttgacattgatattcatcatggcgatggtgttgaggaggccttttatactacagacagg
gtaatgactgtttcattccacaaatttggagattactttcctggtacaggggatgtacgt
gatataggtcatgcttctggaaaatactactctctcaatgtaccattagatgatggaatt
gatgatgagagctaccagtccctgtttaaacctattatgggtaaggtgatggaagttttc
aggcccggtgctgtgatattacagtgtggtgcagactctctatccggagacagattaggt
tgctttaatctttcgattaaaggtcatgcagagtgtgtgagatatatgagatcttttaat
gtgccactacttctgcttggtggaggtggctatactattagaaacgttgcccgttgttgg
tgctatgagactggagtcgcccttgggatagaacttgaggataaaatgccacagcatgag
tattatgagtactttggtccagactatactcttcatgtagcaccaagtaacatggaaaat
aagaactctcgccagatattggatgacataaaagcaaagcttcttgataatctctcaaaa
ctgcagcatgcacctagtgtcccatttcaggagcgcccacctgataccgagtttccagag
gctgacgaagatcaagatgaagatggaaggtggggtcgagagtctgaaatggatgttgat
gatcagcgtaagcctttctctggaagagtgaaaatggaaatatttgaacctgagcaaaaa
gaggcggtggatgccagagaaggggaacatgcaagaggtatggatgcaacattcacagag
actgcatcattgaaggcctcaaatccaatttcaatatcgatggatggaatgcatattaat
tcagaacaaggaaacgcaagcaagcaatccgatggaccagctgatatggatccctaa
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