KEGG   Daucus carota (carrot): 108215530
Entry
108215530         CDS       T05350                                 
Name
(RefSeq) histone deacetylase 19
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03082  ATP-dependent chromatin remodeling
dcr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    108215530
   03083 Polycomb repressive complex
    108215530
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dcr03036]
    108215530
Enzymes [BR:dcr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     108215530
Chromosome and associated proteins [BR:dcr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     108215530
   HDAC complexes
    Sin3A-HDAC complex
     108215530
    BRAF-HDAC complex
     108215530
    REST complex
     108215530
    SHIP complex
     108215530
    MiDAC complex
     108215530
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     108215530
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108215530
  Chromatin remodeling factors
   NuRD complex
    108215530
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 108215530
NCBI-ProteinID: XP_017243498
UniProt: A0A165YV85
LinkDB
Position
4:46158684..46163818
AA seq 498 aa
METGGNSLPSGSDGTKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMH
VLKPIPARDKDLCRFHADDYVSFLRGITPETQQDQARQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHGNCDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKVHERVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGHASGKYYSLNVPLDDGI
DDESYQSLFKPIMGKVMEVFRPGAVILQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGIELEDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSRQILDDIKAKLLDNLSKLQHAPSVPFQERPPDTEFPEADEDQDEDGRWGRESEMDVD
DQRKPFSGRVKMEIFEPEQKEAVDAREGEHARGMDATFTETASLKASNPISISMDGMHIN
SEQGNASKQSDGPADMDP
NT seq 1497 nt   +upstreamnt  +downstreamnt
atggaaactggagggaattctttaccatctggttcagacgggacgaaaagaaaagtttcc
tatttctatgatccagaagtcggcaattattattatgggcaaggccatcctatgaagccc
cacagaatccgtatgacgcatgctcttttggctcactatggtttactgcagaacatgcac
gttctgaagcccattccagctagagacaaagatctttgcaggtttcatgctgatgattat
gtgtctttcctgaggggaatcactcccgaaacacagcaagatcaagcgagacagctgaaa
aggtttaatgttggcgaagactgccctgtctttgacggtctctattccttctgccaaaca
tatgctgggggctcagttggcggtgctgttaaactaaaccatggaaattgcgatattgct
ataaactggtctggtggacttcaccatgccaaaaaatgtgaagcttctgggttctgctat
gtgaatgacatagttcttgcgatcttggaacttcttaaagtgcacgagcgtgttctatat
gttgacattgatattcatcatggcgatggtgttgaggaggccttttatactacagacagg
gtaatgactgtttcattccacaaatttggagattactttcctggtacaggggatgtacgt
gatataggtcatgcttctggaaaatactactctctcaatgtaccattagatgatggaatt
gatgatgagagctaccagtccctgtttaaacctattatgggtaaggtgatggaagttttc
aggcccggtgctgtgatattacagtgtggtgcagactctctatccggagacagattaggt
tgctttaatctttcgattaaaggtcatgcagagtgtgtgagatatatgagatcttttaat
gtgccactacttctgcttggtggaggtggctatactattagaaacgttgcccgttgttgg
tgctatgagactggagtcgcccttgggatagaacttgaggataaaatgccacagcatgag
tattatgagtactttggtccagactatactcttcatgtagcaccaagtaacatggaaaat
aagaactctcgccagatattggatgacataaaagcaaagcttcttgataatctctcaaaa
ctgcagcatgcacctagtgtcccatttcaggagcgcccacctgataccgagtttccagag
gctgacgaagatcaagatgaagatggaaggtggggtcgagagtctgaaatggatgttgat
gatcagcgtaagcctttctctggaagagtgaaaatggaaatatttgaacctgagcaaaaa
gaggcggtggatgccagagaaggggaacatgcaagaggtatggatgcaacattcacagag
actgcatcattgaaggcctcaaatccaatttcaatatcgatggatggaatgcatattaat
tcagaacaaggaaacgcaagcaagcaatccgatggaccagctgatatggatccctaa

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