Daucus carota (carrot): 108215567
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Entry
108215567 CDS
T05350
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108215567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108215567
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
108215567
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
Motif
Other DBs
NCBI-GeneID:
108215567
NCBI-ProteinID:
XP_017243553
UniProt:
A0A165A0X6
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All DBs
Position
4:21076141..21087501
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AA seq
689 aa
AA seq
DB search
MARNKEALLLLIDVGPSMHTVLPEVEKVCSMLVQKKLIFGKYDDVGVVIFGTEDTDNELT
NEVGGYEHVVVLNHLKVVDGDLIKVLEQLPRGTVDGDFLDAIVVGMDMLIKKFGQTIKGK
KRLCLITDATHPIKDPFEGTKQDQVSTIAEQMFAHGMKMECIVYRGQQDMDGNTSVIEEN
DILLDIISKMTSSRKVHVENSTSLLGALRTRNISPVTIYRGELELSSEVKVLVWVYKKTS
EEKFPTLKKYSDKAPETDKLATHEVKVEFEYKKVDDPSKVVPPEQRIKGYRYGPQVVPIS
SAEWEAVKFKPEKGVKLLGFTDASNIMRHYYMKDVNVVIAQPGNMKAALAVSALARGMKE
MNKVAIVRCVWRQGQANVVIGVLSPNISERDDVPDSFYFNVVPFAEDVREFQFPSFSNLP
SSMLPNNEQQEAADNLVKMLELSPTGKAECLQPDFTPNPVLERFYRYLELKSRHLDAAVP
PLDDTLKKITEPDSDLLSHSKPVIDGFRKLFELKENPKLKKSSRRLLREKPSGSNEERDD
PGNIVDAEAVNFIEHASSFKVEKIGESTPVQDFESMMLRRDGADWVSKAIADMKSIIMQL
VTDSFEGDNFQKVLECLIALRKGCILEQEPKHFNEFLLKLCKFCTEKDLASFNEFLASKN
VLLISKSEAEESEITEDEAKIFLVKAEQK
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaacaaggaagcgttgcttttgttaattgatgttggtccctcaatgcatact
gtgttgcccgaggttgaaaaagtttgttctatgcttgtacaaaagaagctgatttttggt
aaatatgatgatgtgggagttgttatatttggaactgaagatactgacaatgagctcacc
aacgaagtcggtggatatgaacatgtggtcgtcctgaaccacctcaaggttgttgatgga
gatctcattaaagtattagaacagcttcctcgtggaactgttgatggtgactttcttgat
gcaattgttgttggaatggatatgctgatcaagaagtttggacaaacgattaaagggaaa
aaacgtctttgtctcatcacagatgcaactcatcctatcaaagacccatttgaaggaact
aaacaagatcaagtcagcaccattgctgaacagatgtttgcacacggcatgaaaatggag
tgcatagtttataggggacagcaggatatggatggtaatacgagtgttatagaagagaat
gatattttactggatataatatcaaagatgacttcttcaaggaaggtccatgttgaaaat
tcaacttcacttttgggtgcacttagaactcgcaatatatctcctgttacaatatacaga
ggtgaacttgagctaagctctgaagtgaaggttctggtgtgggtctacaagaaaacttct
gaagagaaatttcccactttgaaaaagtactctgataaagcacctgaaactgataaactt
gctactcacgaagttaaagtagaatttgaatacaaaaaagttgatgatcctagtaaagtt
gtgcctccagaacaaagaataaaaggttacagatatgggcctcaagtagttcctatatca
tctgctgaatgggaagctgtgaaatttaaaccagagaagggtgtgaaactgcttggattt
actgatgcttcaaacataatgagacactattacatgaaggatgttaatgtagtcatagcc
caaccgggtaatatgaaagctgcccttgcagtttctgctttagcaagaggaatgaaggag
atgaacaaagtggcaattgttcgttgtgtatggaggcaaggacaggctaacgttgttatt
ggagtgctgtctcctaacatatctgaaagggatgatgttcccgattcgttttattttaat
gtagttccttttgcggaggatgttcgtgagtttcagtttccgtcgtttagcaatttacct
tcatcaatgctgccaaacaatgaacagcaggaggctgctgataatttggttaagatgctt
gaactttcaccaactggaaaagcagagtgcttgcagcctgacttcaccccgaatcctgta
ttggagcgtttctatcgctatctcgaattgaaatcaagacatctggatgcggctgtacca
cctctagatgataccctaaaaaagataacggaacctgattctgatcttctatctcacagc
aaacccgttattgatggattccgtaagctgtttgaactaaaggagaacccaaagttaaag
aagtcttctagacgattattaagagagaaaccttctggatccaatgaagagcgggatgat
cctggaaatattgttgatgctgaagctgtcaattttattgaacatgcatcttccttcaaa
gttgagaaaattggggaatctacacctgttcaagattttgaatccatgatgttgcgaaga
gatggagcggattgggttagcaaagctattgctgatatgaaaagtataattatgcaactg
gtaacagattccttcgaaggagataattttcagaaggtactggaatgtttgattgctctg
cgcaagggatgcattcttgagcaagagccaaagcattttaatgaatttttgctcaaactt
tgcaaattctgcacagagaaggatcttgctagtttcaacgagtttcttgcatctaaaaat
gtcttgctgatctcaaaatcggaagcagaagagagtgaaattacagaagacgaggctaaa
atctttttggtcaaggcagagcaaaaatga
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