Daucus carota (carrot): 108219291
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Entry
108219291 CDS
T05350
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1 isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108219291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108219291
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108219291
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
108219291
NCBI-ProteinID:
XP_063947808
LinkDB
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Position
4:47245599..47248747
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AA seq
485 aa
AA seq
DB search
MESDLGKLFIGGISWDTDEDRLRSYFGAYGEVVEAVIMRDRTTGRARGFGFIVFADPAVA
ERVVMEKHMIDGRPVEAKKAVPRDDHHITSKNSNSNQGSPGPGRTKKIFVGGLASTVTEN
DFKLYFDQFGTITDVVVMYDHNTQRPRGFGFITYDQEEAVDRVLQRTFHELNGKMVEVKR
AVPKELSPGPTRSPVVGYNYGLGRTNNFLNSYAQGYDLSPIGGYGVRMDGRLSQVLSGRS
GFSPFSSLPYGMNMGLEPGLSPSFGGNSSFSDNLGYERILGLNYGGNLNRYNTPIGYNVG
NGRSESFLNSPARNVWGGNVDLNSSANINPAGTFFGSGNGSLGVIGNSSANYGSSPVSAQ
VVGSASGYNSRNIDHGGGENNYRLGATGIGRNIGPGRAAISPFVASTGDYERSHGDLYSA
NSRFVDAPWQSTSAEVDDSSSFRYGLGTAAESTVISSEGFVGSYSIADRQASRGNTVLQR
MEFEK
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggaatcggatctcgggaagctatttatcggtgggatttcctgggatactgatgaagat
cggcttaggagttattttggagcgtatggagaagtggtggaggcggtgatcatgagagac
cgcaccactggtcgtgctcggggttttggttttattgtctttgctgatcccgcggttgca
gagagagtggttatggagaagcatatgatagacggtcgacctgtggaggcaaagaaagcg
gttcccagagatgatcatcacataacaagtaaaaatagtaatagtaatcaaggatcacct
ggtcctggccgcactaaaaagatttttgttggtggtttagcatctacagtcacggaaaat
gactttaagttgtactttgatcaatttggtacaattacggatgttgtagtgatgtatgac
cacaacacacaaaggcccaggggttttggattcataacgtatgatcaagaggaagccgtg
gatagggtgttacagagaaccttccatgagctaaatggtaaaatggttgaggttaagcgg
gcagttccaaaagagctttctccaggtccgactcgcagccctgtggttggatacaattat
ggtcttggcagaaccaacaactttctcaatagctatgctcagggatatgacctgagcccg
attggaggctatggagtcaggatggatgggagacttagtcaggttcttagtggtcggtct
ggattctccccattcagttcccttccatatggtatgaatatgggtctcgaaccagggttg
agtccaagctttggaggaaactccagctttagtgacaaccttggctatgaacgcattcta
ggtttaaattatggagggaacctaaataggtataatactcccattggatataatgtggga
aatggtagaagtgaatcttttctaaactcaccagctcgaaatgtatggggtggaaatgtt
gaccttaatagttctgcaaacattaatcctgctggtacattcttcgggtctggaaatggg
agtcttggagtcattggaaatagttcggctaattatggttcctctcctgtttctgctcaa
gttgtagggagtgcttctgggtacaacagtaggaacatagatcatggaggcggagaaaac
aattataggttgggagctacagggatcggaagaaacattggaccaggtagagctgcaatt
tcaccttttgttgcatcaactggtgattatgaacggtcacatggagacttatacagtgcc
aattcaaggtttgtagatgcaccatggcagtccacatctgcggaggttgatgattccagt
tcatttcgttatggactgggcactgcagcagaatccacagtgataagctctgagggattt
gttgggtcttatagtattgcagatagacaagccagtagaggtaatactgttctccagcgt
atggaattcgaaaaatag
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