Daucus carota (carrot): 108223188
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Entry
108223188 CDS
T05350
Name
(RefSeq) serine/arginine-rich-splicing factor SR34 isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108223188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108223188
Spliceosome [BR:
dcr03041
]
Common components
Common spliceosomal components
SR proteins
108223188
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
108223188
NCBI-ProteinID:
XP_017252797
LinkDB
All DBs
Position
5:complement(33974167..33979403)
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AA seq
334 aa
AA seq
DB search
MSRSSRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGFAFVEFEEARDAEDA
IRGRDGYDFDGHRLRVELAHGGRGNSSATDRYSNHGRGRGGGGGGGGGGGGRGGVSRRSD
YRVMVSGLPSSASWQDLKDHMRRAGDVCFSQVFREGGGTTGIVDYTNYDDMKYAIRKLDE
SEFKNAFSRGVIRVKVYDSSRSPGHRGRSRSRSRSKSRSRSKSKSPKPKSSRRSRSRSRS
ISSRSRSRSRSKPRATSRSRSRSRSPVPSRQKRGNKSPKKHDSRSRSPSPKKHISRSRSP
SPKKHISRSKSPSLKKHMSRSKSPSRSRSNSVSR
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggtcaagtagaactctgtatgttggcaatcttcctggtgatattcgtgagcgg
gaagtcgaagatctcttttacaagtatggaccgattgcgcatattgatttgaaaatacca
cctaggccccctggttttgcgtttgttgagtttgaagaagctcgtgatgctgaggatgct
attaggggacgtgatggttatgattttgatggacaccgattgcgggttgagctggcacat
ggtggacgtggtaattcgtcggcaacagaccgctatagtaatcatggccgtggtcgtggt
ggagggggagggggaggtggaggtggtggaggacgtggaggcgtgtcaaggcggtctgat
tatcgtgtgatggtgagcggattaccctcttctgcttcatggcaagaccttaaagatcat
atgcgccgtgcaggagatgtatgcttctcacaagtcttccgtgaaggtggtggcactact
ggtattgtggattatacaaactatgatgatatgaaatatgctatcagaaaattggatgag
tcggagtttaaaaatgccttttcccgcggtgtgattcgagtaaaggtttatgattcaagc
cgcagtccaggtcacagaggcaggagtcgcagccgaagccgaagtaagagtcggagcagg
agcaagagcaaatctccaaaacccaaatcttcacgtcgctcaagatctcgttctaggtcc
atatcttctcgctctcgatcccgctctcgatcaaagccacgtgctacatcaagatctcgg
tcaagatccaggtctccagtaccatctcggcagaaacggggtaataaaagcccaaaaaag
catgattccaggagcaggagccctagccccaaaaagcacatatctaggagcaggagtcca
agccctaaaaagcacatctcgaggagcaagagtccaagcctaaagaagcacatgtcgagg
agcaagagtccaagccgtagccgtagtaatagtgtatccaggtga
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