Daucus carota (carrot): 108227386
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Entry
108227386 CDS
T05350
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13-like isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108227386
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
dcr01002
]
108227386
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108227386
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108227386
Peptidases and inhibitors [BR:
dcr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108227386
Ubiquitin system [BR:
dcr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108227386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH
UCH_1
ubiquitin
SASP
Motif
Other DBs
NCBI-GeneID:
108227386
NCBI-ProteinID:
XP_017257988
LinkDB
All DBs
Position
6:complement(29395303..29410310)
Genome browser
AA seq
1134 aa
AA seq
DB search
MTLMTHQPLDQDDEEMLVPSSGLVEVQSLEGPQLLESPQPMEVVGQTEGTNAAENQVVEE
PPQASRFTWTVDNFSRLNVKKQYSDTFVVGSYKWRVLIFPKGNNVDHLSMYLDVADSGSL
PYGWSRYAQFSLAVINQIQPKFTVKKDTQHQFHARESDWGFTSFMPLSDLYDPNKGFLLN
DTCIIEADVAVRKVTDFWTYDSKKETGYVGLKNQGATCYMNSLLQFLFHIPYFRKAVYHM
PTTESDMPSGSIPLALQSLFYKLQFNETSVSTKELTKSFGWDTYDSFLQHDVQELNRVLS
EKLEDKMKGTVVEGTIQKLFEGHHMNYIECINVNFKSTRKESFYDLQLDVKGCADIYASF
DKYVEVERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDR
YEFPLELDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSEQWYK
FEDERVTKEDMKKALEEQYGGEEELPPTSPGYNNAPFKFTKYSNAYMLVYVRESDKEKVF
CDVDEKDIAEHLRIRLKKEREEKEDKRKYKAQAHLYTIIKVAHDDDLREQIGKDIYFDLV
DHDRVHNFRIQKQMSFVQFKEEVAKEFGIPVQCQRFWYWAKRQNHTYRPNRPLTPQEELQ
SVGQLREQSNKLHNAELKLFLEVERGQDLCPLPPPDKTKDDILLFFKLYDPKREELRYVG
RLYVKSTGKPVEILKRLNELAGFDPDEEIELYEEVKFEPCVMCDRLDMRASFRMSQIEDG
DIICFQKIANLQSEEEYRYPDVPSFLEYVKNRQIVHIRSLERPKEDDFSLELSKLHTYDD
VVERVAQKLGVEDPSKIRLTPHNCYSQQPKPHPIKYRAAEHLLDMLVHYNQISDILYYEV
LDIPLPELQCLKTLKVAFYRASENEVCLKQPDIHNIRLPKQSTVEDVLNEIKTRAELSHP
SAELRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEIPEEEKNIGPHDRLIHVYHFTK
DTAAQNQMQIQNFGEPFFLVIHEGETLSEVKVRVQKKLQISDEEFSKWRFAFLSLGRPEY
LLDSDIVSSRFQKKDVYGAWEQYLGLEHSDNTPKRPFTANQNRHTYEKAIKIYN
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgactctgatgactcatcagccgttggatcaagatgatgaggagatgctggtgccgagt
tcggggctagttgaagttcagagcctagaagggcctcagcttttggaaagtcctcagcct
atggaagtggtagggcaaacagaaggtactaatgcagcagagaatcaagtggttgaggag
ccgccgcaggcttctaggtttacatggactgtcgataacttttcaaggctgaatgttaag
aaacagtattccgacacttttgttgttggtagctataaatggcgtgtacttatctttccc
aagggaaataatgtggaccacttgtcaatgtacttagatgtggcagattcaggatctttg
ccttatgggtggagcagatatgcacagttcagcttggctgtgattaatcaaattcagcca
aagttcacggtgaaaaaggatacacagcatcaattccatgccagggaaagtgattggggt
ttcacatcattcatgccgcttagcgacctatatgaccctaataaaggttttcttttgaat
gatacttgcatcattgaagctgatgttgctgtgcgtaaggtcacagacttttggacgtat
gattcaaagaaggaaacaggttacgttggccttaaaaatcaaggagcaacttgttacatg
aattcgctcctacaatttttattccatataccatacttcaggaaggcggtttatcatatg
ccaacaactgagagtgacatgccttctggaagcattcctctggctcttcagagtttgttt
tataagcttcagtttaatgagaccagtgtttctacgaaagaattaacaaagtcttttggt
tgggatacatatgattctttcttgcagcatgatgttcaagaacttaatagagtcttgagt
gaaaagcttgaagacaaaatgaagggaacggttgtagaagggacaatacagaaacttttc
gaagggcaccacatgaattatatcgagtgcattaacgtgaactttaagtccaccaggaaa
gaatctttttatgatctacaacttgatgtgaagggatgtgcggatatatatgcttctttt
gacaaatatgtggaggttgaacgtcttgagggcgataacaagtatcatgctgaagaacat
ggtttacaggatgctaagaaaggcgttttattcatcgactttcctccggttcttcaattg
cagttaaagcggtttgaatatgattttatgcgagatactatggttaagattaatgacaga
tatgaattcccgttggaacttgatctagatcgggaaaatggtaaatatttgtcacccgat
gcagatagaagtgttcgcaatctttacactcttcatagtgttttggtccatagtggtggg
gtgcatggagggcactattatgcatttatcagaccaaccctctctgaacaatggtacaaa
tttgaagatgagcgtgtcacgaaagaggatatgaagaaagccttagaggagcaatatggt
ggcgaggaagagttgcctccgaccagtcccggttacaataatgctccatttaagtttaca
aagtattcgaacgcatacatgcttgtttatgtgcgtgaaagtgacaaggagaaggtattt
tgtgacgttgatgagaaggacatcgccgagcacctcaggataaggctgaaaaaagaaaga
gaagaaaaggaggataaaagaaaatataaagcacaagcacatctttatactattatcaag
gttgctcatgatgatgatttgagggagcagatcggcaaggatatctattttgatcttgtt
gatcatgacagggttcataattttcgtattcaaaagcagatgtcttttgtccaatttaag
gaagaggttgccaaagaatttggtataccagttcagtgtcaacgtttctggtactgggca
aagaggcaaaatcacacataccgcccaaatcgacctttgacacctcaggaggaattgcag
tcggttggacagttgagggaacaatctaataagttgcacaatgcagagctgaagttgttt
ttggaagtcgaacgaggacaggacctgtgccctctaccaccacctgacaagactaaggat
gatatacttctgttcttcaagctttatgatcctaagagagaagagcttagatatgttggt
cggctttatgtgaagagtacagggaagccagttgaaatcctgaaacgattgaatgaatta
gcaggttttgatcccgatgaagaaattgaactatacgaggaagttaaattcgaaccttgt
gttatgtgtgaccgccttgacatgagagcttcatttcgaatgagccagattgaagatgga
gatattatttgctttcagaagatcgctaatcttcagagtgaagaagaatacagataccct
gatgttccttcttttctggaatatgtgaagaatcgacagattgttcatattcgatctctc
gagagacctaaggaggatgatttctctttagaattgtccaagttgcatacttatgatgat
gtggttgaaagagtggcacaaaaacttggtgttgaggatccttcgaaaatcaggctcact
cctcacaactgctactctcagcaacctaaaccccatcctattaaatatcgagcagcagag
catttattagacatgctggttcactacaatcagatatctgatattttgtattatgaagtg
ctggatattcctttgccagagctacagtgtctaaagactcttaaagttgctttttatcgt
gcatctgagaatgaggtgtgccttaaacagcctgatatccacaacattcgactgcctaaa
cagagcacagttgaagatgtgctgaacgaaatcaagactagggcggagctgtctcatccc
agtgcagaactcagactacttgaggtgttctaccacaagatctacaagatctttcctcta
aatgagaaaattgaaaatatcaatgatcagtactggacattgcgagcagaagagattcca
gaagaagagaaaaacattggaccacatgatcgtttaattcatgtttatcacttcactaaa
gatactgcagcccagaaccaaatgcaaattcaaaactttggggagccatttttcttggtc
atccatgaaggtgaaactttgtcagaagtcaaggtgcgggttcaaaagaaattgcaaatt
tcagacgaggagttctcgaagtggagatttgcgttcttatctttgggtaggccagagtat
ctgctagactcagacattgtatctagccgtttccagaaaaaggatgtgtacggtgcttgg
gagcaatacctggggctggagcattctgataatactccaaaaaggccttttactgcaaat
cagaatcgtcatacatatgagaaggcgatcaagatatacaattag
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integrated database retrieval system
