Daucus carota (carrot): 108227415
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Entry
108227415 CDS
T05350
Name
(RefSeq) transcriptional elongation regulator MINIYO
KO
K20826
RNA polymerase II-associated protein 1
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108227415
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
108227415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
108227415
NCBI-ProteinID:
XP_017258029
LinkDB
All DBs
Position
6:complement(17219769..17228498)
Genome browser
AA seq
1565 aa
AA seq
DB search
MNKKDRNGKKTSNAPPMVGGIVEKGFSENTPLSPSSFPRATVLPFPVARHRSHGPHWAPK
LSDSIGNLNDEDENEDDDDNGEMMAQFAEPVQRKEKKSVDFSRWRELINDNAGMISKPVQ
RKEQELMTNAVMSSNKESNKLNAKPKELNGVNEANKIDENVSRHVDFENAVQVEGGVFGN
DYKVQDVEMEIADFSKKNVVVEQEEDVSDMNIDDVSTDAHNELFLSEPTNHRNPYKSALD
RNDILESVLKPGRVDKYLGFEQEPKTLGSQIDAENRARLQEMSADEIADAQDELKKRLSP
SVLENLRRRGQDKSKKQKNSTSGVRIGGQVGNLRGENLNDKSTFPQSETSLNATETDLVM
TQADKAMPVNDNSGSPWDAWSKRVESVRELRFSLEGNVIDMSGIKSGYSAGNVSERDLLR
TEGDPAAAGYTIKEAIALIRSVVPGQRVLALHLLASVLNRASSCILQNQVGDTWKCSNNR
LADWGAIWAFILGPEPELAFSLRMSLDDNHDSVVLAGAKVIQSVLCCDINESFFDISEKT
VTYQNGVCTAPVFRSRPRIEDSFLKGGLWKYNTKPSDLLPFDDNTMHHEAEGEKTIQDDI
VVAGQDLAAGLVRMGIISRIRYLLETDPSSVLEECVISILIAIARHSPACSDAIINCERL
VHTVVKRFTMNDQMEINSFKIKAVKLMKVLAQYEKNCLEFTKNGTFQKMTWHLYRYTSSI
DHWVKSGRENCKKSSDLMVEQLRFWKVCIQYGYCVSYLTDLLPSLCIWLDVSTLEKMIAS
NILDEFTSIANEAYLVLEVLTRRLPNFYSQVESEEIDTDDKETWCWSHVGPIVDLALKWI
AFKSDSNLSKCFEWKNASRSDSVVKSQTVKSLLWVISSVMHMLSSLLLRVIPEDTSRLQG
GQLPWLPEFVPKIGLHVIKHEFLSFTGMTNKDYGKYSSRCGSFLEYLCYLRHESEPEMLF
ASVVCLRGSVQVVHSIDKLIRLANMHTTSSQGFTFSSEDKILAAGILNSSSAELEMMMIT
FMDLIASEWQFMQSIEMFGRGGPAPGVGIGWGASGGGFWSKTVLLAQMDANVVIHLLELL
PVVHAKDPPNSEEMRFIMQKINCALNICLIAGPNDRFLLDKLLGYLFQIPVLKCLDLCVR
EFKEIRWQYEEQDYQLFSDCLTSHFKNRWLSLKKKSGAESKKSRLGHESPKNKKFNLDTI
HEDCHTSNINGHGHNSNFLVVEWAHQRLPLPSHWFLSSLSNIIDRSAKLSSVPDSLDCKN
NAALLEVAKGGLFFLLGIESVSNFLSSNYHTSVQHVPLSWKLHSLSACLYDGMGVLEDNS
RDLFEILQELYGQHLDKSRLLHKGGMDNNLELLRFHSDVHESYSTFIETLTEQFAAVSYG
DMIYGRQVTMYLHRSVESPVRLAAWNSLSNARVLELLPPIEKCIAEAEGYLEPAEDNDKI
LEAYVKSWTSGALDRAVGRGSVAFTLVLHHLASFIFVNPIGDRVTVRNKLVKSLLRDYSG
KKQHQSMMMDLIRYSKPSTDQQLGKELPVPQMYEFDKRFDLLKQACEGSISLLSEVDKLR
SSFGK
NT seq
4698 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaaagatcgcaacggcaagaaaacatccaacgcgccgccgatggtcggcggc
atagttgaaaagggcttctccgaaaacaccccactctccccttcctctttcccacgcgcc
accgtccttccttttccggtcgcccgtcatcgctcccatggccctcattgggcacctaaa
ttgagtgattctattggaaacttgaatgatgaggatgagaatgaggatgatgatgataat
ggggagatgatggcacagtttgctgagccagttcagaggaaagagaagaagagtgtggat
tttagtcggtggcgagagctcataaatgataatgccggtatgatttcgaaaccagtgcag
aggaaagagcaggagctaatgactaatgcagttatgagttctaataaggaaagcaataag
cttaatgcaaagcctaaagagctaaatggagttaatgaggctaataaaattgatgagaat
gtgagtaggcatgttgattttgagaatgctgttcaggtagagggaggggtttttggaaat
gattacaaggtacaggatgtggagatggaaattgcagatttttcaaagaagaatgtggtg
gtagaacaagaagaagatgtctcggatatgaatattgatgatgtgtcaactgatgcgcat
aatgaactttttctcagtgaacctacaaaccataggaacccgtataagtcagcattagat
aggaatgatatattggaatctgtcttgaaacctggtcgtgtcgacaaatacttgggattt
gaacaagaaccaaaaacccttggtagtcaaatcgatgctgagaatcgtgctcgtcttcag
gaaatgtcagctgatgagattgctgacgcacaagatgagctgaagaagaggctgagtcct
tcagtactagaaaacttaaggagaagggggcaagacaaatcaaagaagcaaaaaaattca
acttcaggtgtacgtattggtggtcaagtcgggaaccttcggggtgaaaatttgaatgat
aaatctacatttcctcagagtgaaacatcattaaatgcgacagagacagatttggtgatg
acacaagctgacaaagcaatgccagtaaatgacaatagtggcagtccatgggatgcttgg
agcaaaagggttgaatctgttagggaattgaggttctcattggaaggaaatgtcattgat
atgtctggtattaagagtggatatagtgcgggaaatgtctcagaacgtgaccttcttcga
actgaaggtgaccctgctgctgcaggttacaccatcaaagaagcaatagcgcttattagg
agtgtggttcctgggcaacgcgtccttgcattgcatttacttgcatctgtgcttaatagg
gcatcaagctgcatcctgcaaaatcaagttggggacacctggaaatgctctaacaacaga
cttgctgactggggggctatctgggcttttatattaggcccagagccagagcttgcattt
tcacttaggatgtctcttgatgataaccatgactctgtggttttagctggtgccaaagtc
attcagtctgtactttgttgtgacatcaacgagagtttttttgatatttccgagaaaaca
gtaacctatcagaatggtgtctgtactgctccagtatttagaagtagacccagaatcgaa
gatagttttcttaaaggtggcttgtggaagtataatactaaaccttcagatcttcttcct
tttgatgacaacaccatgcaccacgaagctgaaggtgagaaaactattcaggatgacatt
gttgttgcaggacaagatttggcagcgggtttggtcagaatggggattatttcaagaatc
cgctatcttttggagacggacccttcatcagttctagaagaatgtgtaatctctatacta
atagccatagcaaggcattccccggcttgttcagatgcaattataaactgtgaaagactt
gttcacacagttgtcaaaagatttactatgaatgaccaaatggagatcaattccttcaag
ataaaggctgttaaacttatgaaggttttggctcaatatgagaagaactgtttagaattt
acaaagaatggaactttccagaagatgacttggcatttgtatcgatatacatcctccatt
gaccactgggtgaaatcgggaagggagaactgcaaaaaatcatctgatttgatggttgaa
caacttcgtttttggaaagtctgcattcagtatggttactgtgtatcttatctcacagat
ttgctcccttctctttgtatctggttggatgtatccacacttgaaaagatgattgctagc
aacattcttgacgagtttacttccattgcaaatgaagcataccttgtcttagaggttctc
actagacgacttccaaacttctattcacaagtggaatcagaagaaattgacacagatgac
aaagaaacatggtgttggagtcatgtaggcccaattgttgatttagctttaaaatggata
gcatttaagagcgattcaaatctttctaaatgctttgagtggaaaaatgcaagtaggagc
gattctgttgtgaagagtcagacagtgaagtccctgttatgggtaatttcatcagtcatg
cacatgctttccagtttattactgcgtgtcattccagaggatacctctcgtcttcaaggg
gggcagcttccatggcttccagagttcgttcctaaaattggacttcatgtaatcaaacat
gagtttctcagctttacagggatgaccaacaaagattacggcaagtattcttctcggtgt
ggttctttcctcgagtatctgtgttatctgagacatgaaagtgaacctgagatgttgttt
gcttctgtggtctgtcttcggggatcagttcaagttgttcattctattgataagctgatc
cgacttgcgaacatgcatacgacatcctcccagggattcactttttcaagtgaagataaa
atacttgcggctggaattctcaactcttcctcggccgaattagaaatgatgatgataact
tttatggacttaattgcttccgagtggcaatttatgcaatccattgagatgtttggtaga
ggtggtcctgctccaggtgttggtatcggttggggtgcttctggtggcgggttttggtcg
aaaacagtcttattggctcaaatggatgcaaatgtggtcattcacttacttgagttactt
ccagttgtgcatgccaaagatccaccaaattctgaagagatgagatttattatgcagaaa
ataaattgtgcattgaatatatgtttaatcgctgggccaaatgacagattcttgctggat
aagttgttaggctacctgtttcaaatccctgtccttaagtgtcttgatctgtgtgtcagg
gaattcaaagaaatcaggtggcaatatgaagaacaagactaccagctcttcagtgattgc
ttgacttcacactttaagaatagatggctgtctctgaaaaagaagtcaggggcagaaagt
aaaaagagtcgtttgggtcatgaatcacctaaaaataaaaaatttaatctggacactata
cacgaggattgtcacacgtcaaacattaatggtcatggccataattcaaattttctggta
gtagaatgggctcatcagagactgccacttccttcacattggtttctgagttcactctca
aacattatagacagaagtgctaaactttctagtgtacctgattcactagactgcaaaaac
aatgctgccttactagaagtggcgaaaggtggattatttttccttttaggtattgaatct
gtgtcgaattttctttcttctaattaccacacatcagttcaacacgtgccactatcatgg
aaattgcattctttatcggcatgcctgtatgatggaatgggtgttcttgaagacaacagt
agagatctatttgagattttgcaagaactatatggacagcatcttgataagtcaaggctc
ttgcataagggagggatggataataatctggaattactgaggttccattcagacgttcat
gagagttactctacatttatcgaaacactgacagagcagtttgctgctgtatcttatggt
gatatgatatatgggcggcaagttactatgtatttacatcgctctgttgagtctcctgta
agactagctgcatggaattccctttctaatgctcgtgttcttgaacttttgccacctata
gaaaaatgtattgcagaggctgaagggtacctcgaacctgctgaggacaatgataagatt
ctggaggcttatgtgaaatcatggacgtcgggggctcttgacagagcagttggtcgtggc
tcagttgcattcacattggttctgcaccacctagcctcttttattttcgtcaatcccatt
ggtgatagggtaacagtgagaaacaaacttgttaaatctctcttgagagattattctggt
aaaaagcaacatcagagcatgatgatggatctaattcgatacagcaagccatctactgac
caacaacttggcaaagaacttccagtgcctcagatgtatgaatttgacaaaagatttgac
ttgctgaaacaggcctgtgaaggaagcatctcgctcttgagtgaggtagacaagcttagg
tctagctttggaaagtaa
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integrated database retrieval system
