Dendrobium catenatum: 110093928
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Entry
110093928 CDS
T05027
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dct
Dendrobium catenatum
Pathway
dct03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110093928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dct03021
]
110093928
03019 Messenger RNA biogenesis [BR:
dct03019
]
110093928
Transcription machinery [BR:
dct03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110093928
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110093928
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
VHS
zf_UBZ
TF_Zn_Ribbon
Motif
Other DBs
NCBI-GeneID:
110093928
NCBI-ProteinID:
XP_020674645
LinkDB
All DBs
Position
Unknown
AA seq
973 aa
AA seq
DB search
MDGERFISSASAARENPRPLGFAQERLGRPPTDSAQRATTSILDRFRAMLREREEDLRGS
GDETPPPPDGNEIVRMYGELLTELTFNSKPIITELTIIAGDQREHARSIAEAVCARIDEV
PQDQKLPALYLLDSIVKNIGDDYVRTFAARLPKTFCQAYNDVHSSLHPAMRHLFQTWSQV
FPHSTLRKIEDELKFSTPENQRLIGLASMRTSETSQPSHGIHVNPKYLEARRQFENPEAD
IRHSREVSSGIQVSGHRSFTKYNDHDLDHFGFQPSSLKMVREGSPLTLTLHGSSMEGQEG
PFLSSQRKVASRVSPTRIGLRRSTSPQGHRFQMSSPGRVIEATSRSHSGLDFQSHRASES
NGWVGRNLAIDDGAQQSVALTTYNKYGRQRQRELIDAYGNYRGKDFLHESLPKIQRVDVN
GIKGKAGKMDWQNSEEEEYVWEDMSPTHVDPSKRSRMQSEQSTDSLGLRDNSSRSGIIAQ
KSDFRRRSWPVPPLKDSTTTIDDRIGIRHYGLGPMNKMYLDDTGSTIQQFRHHESSQHVQ
EHGSLPHVFHRPTPDNISPKSQGRPFQLPYLVGGVTPSVNHKRHSFYDNSHNAEMPFLNL
SSASSDTTNHEMSTSAAQKAHHPPIAPVPWPPAHISQSLQLLPIANLQTDNNKPIGNQQP
NFSVPFPQQQFDANGRQLLGQAFQENRGSFIPPVLNQPLSGVQSHGQSGVLDSILPNPIP
GMPISSVKNISLHGRAGMPPLPPGPPPLSSQSLPASQNSSAASQSSVSGFSGLISSLMAQ
GLISLTPQAQSQCMFQNTMGLEFNAELLKIRHESAINAMYTDLPRQCTTCGLRFTCQEDH
SNHMDWHVTKNRISKNRKQKPSRKWFVSAKEWLCGAETLGADAVPGFLPTEVVPEKKEDT
EMAVPADENQTVCALCGEPFEDFYSDETEEWMYREAVYMNAPNGDIEGLDRSQLGPIVHI
KCRSESAEGSGQA
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggatggcgagagattcatttcctctgcctccgccgcccgcgaaaaccctaggccctta
gggtttgcgcaggagcgactcggccggccgccgacggattcggctcagcgcgcaacgacg
tcgatcttggatcgcttccgtgcgatgcttcgcgaacgggaagaagacttgaggggcagt
ggggacgagacgccgccgccaccagacgggaacgaaatcgtgcggatgtatggggaactt
ctcaccgagctcacctttaactcgaagccaatcatcacggaactcaccatcattgccgga
gaccagcgggaacatgccaggtcgatcgcggaggctgtgtgcgcccggattgacgaggtc
ccacaagatcaaaaattacctgctttgtatcttctggatagtatagtgaagaacattggt
gatgattatgtgaggactttcgctgctaggcttcctaagacgttttgccaggcatataat
gatgtccattccagccttcatcctgccatgcgccacctctttcagacttggtcacaagta
ttcccccattcaacactacgcaaaattgaggatgaattaaagttttctacacctgaaaac
cagaggctaattggcttggcgagtatgcgaacttcagaaacttctcaaccatctcatgga
attcatgttaatccaaaatacttggaggcacgacgccagtttgaaaaccctgaagcagat
attcggcattcaagggaagtttcttctggaatacaagtttctggacatagatcatttact
aaatataatgatcatgatttggatcactttggttttcaaccttcaagcctaaaaatggta
agagaaggttctccactgactctaacactacatggatcatcaatggagggacaggaaggg
ccattcttaagttcacagagaaaggtggcatcacgggtatctcctacaaggattggactt
aggaggtccacatctccacaaggccataggttccaaatgagttctcctggacgggtgatt
gaagcaacttcacgatctcattctggacttgactttcaatctcacagagcaagtgagagt
aatggttgggttggaagaaacttggcaatagatgatggtgctcagcaatctgttgctctg
acgacatacaataaatatggaaggcagcgccaaagagagctcattgatgcctatggaaat
tatagaggtaaagacttccttcatgagagtcttccaaagattcagcgtgtcgatgtaaat
ggcataaagggtaaagcaggaaaaatggattggcagaattctgaggaagaggaatatgtg
tgggaggatatgagcccgactcatgttgatccaagcaaaaggagcaggatgcaatccgaa
cagagcactgatagcttaggattaagagataattctagtagatcaggtatcatagcacag
aaatctgattttagaaggcgcagttggcctgttccacctctcaaagactcaacaactaca
attgatgacagaattggtattcgacattatggtcttggaccgatgaataagatgtatctc
gatgatacaggaagcaccatccaacaatttcgacatcatgagagttctcaacatgttcag
gagcatgggagtttgcctcatgtattccaccgccccacaccggataatattagcccaaag
tctcagggaaggccatttcagttgccttacttggttggtggagtaacaccttctgtaaat
cacaaacggcatagtttctatgataactctcacaatgctgaaatgccatttttgaattta
tctagtgcttcatctgacactacaaatcacgagatgtctacttcagctgcacaaaaagca
caccatcctcctattgctccggtgccatggcccccagctcatatatctcagtctttacag
ttacttcccattgctaacctacagacggataataacaagccaataggcaatcagcaaccc
aatttctctgttccatttccacagcagcaatttgatgcaaatggaagacaactactaggg
caggcattccaggagaatcgtggaagctttattccaccagtactaaatcaacccctaagt
ggtgtacaatctcatggtcaaagtggtgttttggattctattttgccaaatcccatccct
ggaatgcctatttcttcagtaaagaatatctccttacatggacgtgcagggatgcctcct
ttgccgccaggaccaccgccattgtcatcacagtcactacctgcatcccagaacagttca
gcagcatcacaatcttcagtaagcggattttcaggattgatcagttcgcttatggcccaa
ggtttgatttcgctgacacctcaagctcagtctcagtgtatgtttcagaatactatgggc
cttgagtttaatgctgaacttcttaagatacgtcatgaatctgcaataaatgctatgtat
actgatcttccaaggcaatgtactacatgtggcttacgttttacatgccaagaggatcat
agtaaccatatggattggcatgtaactaaaaaccgaatatccaagaatcgtaagcagaag
ccatcacgcaaatggtttgttagtgctaaggaatggctttgtggtgcagaaacgcttgga
gctgatgcggttcctggttttttgcccacagaggtagttccagagaaaaaagaagacacg
gaaatggctgttcctgcagatgagaatcagacagtctgtgcattatgtggggaacctttt
gaggatttttatagcgatgagactgaagagtggatgtatagggaggcagtatacatgaat
gctccaaatggggacatagaaggtttagatcgttcacaattgggtccaattgtccatatc
aagtgtagatcagagtctgctgaaggttctggacaagcctga
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