Dendrobium catenatum: 110094757
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Entry
110094757 CDS
T05027
Name
(RefSeq) probable RNA-dependent RNA polymerase 1 isoform X1
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
dct
Dendrobium catenatum
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dct03036
]
110094757
Enzymes [BR:
dct01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
110094757
Chromosome and associated proteins [BR:
dct03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
110094757
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RdRP
Motif
Other DBs
NCBI-GeneID:
110094757
NCBI-ProteinID:
XP_020675734
LinkDB
All DBs
Position
Unknown
AA seq
1145 aa
AA seq
DB search
MMMRHPEASKSGGKTIQVSGFPLNTTALQVTEFLEKFTGEGSVFALKLRHPKIIKATSKA
FAIVQFVSSAGAIDIKNMICLRRLWFQGYYLTSKDVDHDIVPKPSTSSHVMEDVIVHFGC
QIAENKLYILWTVKDVRIEFGFNLRKICLFISYKDCLYKLELFYESIWEIQLCHSVTQRC
QFLQIQVQAAPKVYVMPPQNSYAMHEGPDFNYFKHSTDDQWIRTTDFTPSCSIGQSSTIC
LQLPYQYDLPNIKDNFVYFREDYCHLDLVKGSSYSYDLGLVPIVRPPHGFRVPYKILFKI
NHLVQNGTLIGPTLDENFFKLVNPSSVDNDLVERALEKMSYLKSSCFRPAKWLQEQYGKL
QRLKNRSISASISLDDGLVYVHRVQVTPTKVYFYGPEINVSNRVVRNYTEEINNFIRVSF
VDEDEEKMRSIDLLSRSGGASSSRRTEIYQRILSTLRNGITIGDKKFEFLAFSASQLREN
SAWMFASSNGVTAAGIRNWMGNFSRIRNVAKYAARLGQSFGSSTETLTVSRDEVEFIRDI
ENSAGYIFSDGIGKISSKFARRVAIKCGLKSSTPSAFQIRYGGYKGVVAVDPMSVRKLSL
RDSMCKYESENIKLDVLAYSKYQPCFLNRQLITLLSTLGVRDNVFEKKQDEVVNQLDDIL
SDADSAKVAIEIMAPGEITNVLKEMLMCGYKPDAEPFLSMMLQTYRASKLFELRTKSRIY
VPKGRAMMGCLDETRILEYGEVFVQVSYIGNTLYHLNGLHTFPARETDQRTVVVKGKVVV
AKNPCLHPGDVRILSAVDVPDLYHMVDCVVFPQKGERPHPNECSGSDLDGDIYFVCWDPE
LIPPRQASPMEYTAAPSETLDHDVQIEEVQEYFTNYIINDSLGVISNAHTVFADREPMMA
HSPPCIELAELFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKATYISKGVIGKLFRA
VKDHLPPGYLIKSFAKEVAKRSYDPDMEVDGFMDYIDDAIFFKENYDFKLGNLMEHYGMM
NEAELLTGNLMKVSRKFNKYRDGEAVRLAVKSLRKEVRSWLDEDNDGGKSAASYAKASAC
YHVTYHEDYWGTYNEGLKRLHFISFPWCAYDKLITIKKQNMTRRRVACLEEERLSHQMEQ
RLRFL
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgcgccacccggaagcttcaaaatcaggaggtaaaacaattcaggtttctggt
ttccctcttaataccacggctcttcaagtaacagagtttttggagaaatttacgggagag
ggatctgtgtttgcattgaagcttcgacatcccaaaattataaaagcgacgtcaaaagca
tttgctattgtgcagtttgtaagcagcgcgggagctatagatataaaaaatatgatttgt
ctgcggcgcttgtggtttcaaggctattacttgacatctaaagatgttgatcatgacata
gtacccaagcctagtacttcgtcacatgttatggaggatgttatagtgcattttggttgc
caaattgctgaaaataagttatatattctctggacagtgaaggatgtcagaattgagttc
ggatttaacttgaggaagatatgccttttcatatcatataaagattgcttatataagctt
gaacttttttatgaaagcatttgggagatccagctatgccattctgttactcaacgttgc
cagtttctccaaatccaggtccaagctgctccaaaagtttatgtgatgcctccacaaaat
tcctatgctatgcatgaaggtccagattttaattatttcaagcattctactgatgaccag
tggataagaacaacagatttcactccatcatgtagcattgggcaatcttcaacaatttgt
ttacaactaccctatcagtatgatcttccaaacataaaggataactttgtttacttccga
gaagattattgtcatcttgatttggtgaaaggctcttcatactcgtatgatttaggtctt
gtgcctattgtgagacctccccatggtttcagagttccatataaaattctctttaagatt
aatcatttagtgcaaaatggaacactcattgggccaactctcgatgaaaactttttcaag
ttggtcaatccttcttctgtagacaatgatttggttgaaagggccttagaaaagatgtca
tatttgaaaagttcttgttttcgccctgctaaatggcttcaagagcagtatggaaaactc
caaagattaaaaaatcgttcaatctcagcttctatttcattggatgatggcttggtatac
gttcacagagttcaagtaacacctacaaaagtgtacttctatggacctgaaatcaatgtt
tcaaaccgtgtggtgcgtaattacactgaagaaattaataactttataagggtctccttt
gttgatgaggatgaagaaaaaatgcgttcaattgatttattgtctcgttctggaggtgct
agcagcagtaggcgtaccgaaatctatcagaggatattgtcaacacttagaaatggtata
accattggtgataagaaatttgaattccttgctttctcagctagccaattgagggaaaat
tctgcctggatgtttgcttcaagcaatggtgtaacagctgctggcatcagaaattggatg
ggaaattttagcagaataagaaatgttgctaaatatgctgccaggttgggccaatctttt
ggcagctccacagaaactttaactgttagtagagatgaggttgaatttattcgggacatt
gaaaattcagcgggctacatcttttccgatggcataggtaagatttcctccaagtttgct
agaagagtagctataaaatgtggcttaaaaagttcaacaccttcagcattccagataagg
tatggtggttacaaaggcgttgtggctgttgatccaatgtcagttagaaagttatccctg
cgggatagcatgtgtaagtatgaatctgaaaacattaaattggatgtccttgcatatagc
aaatatcaaccttgctttctcaatagacagttgataactcttctttctactcttggagtt
cgtgataatgtttttgagaagaagcaagatgaggttgttaatcaattggatgatatttta
agtgatgctgatagtgcaaaggtggccattgagataatggcacctggagaaataaccaat
gttttgaaggaaatgctaatgtgtggttataaaccggatgcagagccattcctttcaatg
atgttacagacatatagggcctcaaaattgtttgaattgagaactaaatcgaggatatat
gttccaaaaggcagagcaatgatgggatgcttggatgaaactaggatattggagtatggt
gaagtttttgttcaggtttcgtacattggaaacacattgtatcatcttaatggccttcat
acattccctgcgagggaaactgatcaacgtactgtggtggtgaaagggaaagttgttgtc
gctaaaaacccatgccttcatcctggtgatgtccgcattttgagtgctgttgatgtccca
gatctttatcacatggttgactgtgttgtttttcctcagaaaggtgaaaggccacaccca
aatgagtgttcaggaagtgacttggatggagatatatactttgtctgttgggacccggag
cttattccgcctcgtcaagcttcacctatggaatatacagctgccccatctgaaactctt
gatcatgatgttcaaattgaggaagtccaggagtacttcacaaattacatcatcaatgac
agtttaggtgtcatttcaaatgctcacacggtcttcgctgacagagaacctatgatggca
catagcccgccttgcatcgagctcgcagaactcttctctattgctgtggacttccccaag
actggcgttccagctgaaattcctcctcatctttatgtcaaggagtaccctgacttcatg
gaaaagcctgacaaagcaacctacatttcaaagggagtgattgggaagctctttagggcg
gtgaaggaccatttgcccccagggtaccttataaaatccttcgcaaaggaggtagcaaaa
aggtcctatgacccagacatggaggttgatggcttcatggattatattgatgatgccata
tttttcaaggaaaactatgatttcaagctcggaaatctgatggaacactacggcatgatg
aatgaagcggaactccttactgggaacttgatgaaggtgtccaggaagttcaacaagtac
agagatggtgaagcagtcagactagctgtgaagtccttgaggaaagaagtaaggtcatgg
cttgatgaagacaatgatgggggcaagagtgcagcttcatatgcgaaggcatcagcttgt
tatcatgtgacatatcacgaggattattggggaacatataatgaaggtttaaagaggctt
cattttattagctttccgtggtgtgcatatgataagctcattactataaaaaagcagaac
atgactagaaggagagttgcttgtctcgaagaagagcgtctgagccaccaaatggagcaa
agattgagattcttataa
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