Dendrobium catenatum: 110098478
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Entry
110098478 CDS
T05027
Name
(RefSeq) 5'-3' exoribonuclease 3
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
dct
Dendrobium catenatum
Pathway
dct03008
Ribosome biogenesis in eukaryotes
dct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110098478
09123 Folding, sorting and degradation
03018 RNA degradation
110098478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dct03021
]
110098478
03019 Messenger RNA biogenesis [BR:
dct03019
]
110098478
03009 Ribosome biogenesis [BR:
dct03009
]
110098478
03016 Transfer RNA biogenesis [BR:
dct03016
]
110098478
Transcription machinery [BR:
dct03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110098478
Messenger RNA biogenesis [BR:
dct03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
110098478
Ribosome biogenesis [BR:
dct03009
]
Eukaryotic type
Pre-60S particles
RNases
110098478
Transfer RNA biogenesis [BR:
dct03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
110098478
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
110098478
NCBI-ProteinID:
XP_020680978
LinkDB
All DBs
Position
Unknown
AA seq
1096 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVIEEEPVEIEDVKIPVDTSKPNPNGLEYDNLYLDMNGIIH
PCFHPEDRPGPTSFDEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRSRRFR
SAKDAADAAAEEDRLRLEFEREGRKLPPKKESEVFDSNIITPGTEFMSILSVALQYYIHL
RLNYDPGWKHIEVILSDANVPGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIMLA
LATHEVHFSILREIVFTPGQQDKCFLCGQMGHLAADCQGNAKRKSGEFDEKGDSDVVAKK
PYQFLNIWTLREYLEYEFRLPSPPFEVDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLMAVYKKEFNAMQGYLTDSWKPNLSRVEHFIQAVGSYEDRIFQKRARLHQRQTERIK
REKAQARRGDDMDPQVNPDQIVAINRYKGSRLASGASPSPFQQIQSSYKSHNPQLRREGR
ESGKATSEISKFKTNKSVVPENAGVNVRAQKVARISTEGATIGRAIVEAENSLEVEMIEN
KEELKTKLKGLLRDKSDLFNTENPEEDKVKLGEPGWKERYYEDKFSAKSPEEIELIRRDV
VLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLGQLTIEFEIGTPFKPFDQLM
GVFPAASAHALPLHYRKLMSDPNSPIIDFYPTDFEVDMNGKRYSWQGIAKLPFIEEDRLL
AEIKNVQHTLTEEEIRRNSTMFEMLFVNVSHPLSPYIFSLSNQHGQLSEKDRAKVIEKID
PVASGGMNGYLSLCNGDPCPPVFRSPIKGLEDIMDNQVICAIYKFPDAHKHLTQPPSGVV
FPKKTVTMGDLKPAPVLWHEDTGRRPFENGRQNPPGSFSGRQLGDAAHRLVTNSLQIRTG
RELNDIEARRQAHPPSHNPHSSASFPHPNGRQHSFDVRAEQHSVGQSQRYGVVSASTYRY
ERHENRQFERNEYGSRPQAPQHSRHWEQRAPAPSHLQYGASAYPVAARNVVQQPIHGSFP
PRSGYRDDYGGFRAYGLQQPWNPQYDPRRGPSSQAPVGRTNTNLQQMDNNRYVVLDRGYN
RRPTPRPPPPPGYGHY
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccggcgttttaccgatggcttgcggagaagtatcctatggtggtagtggac
gtgatagaggaggaaccagtggagatcgaagatgtcaagatacccgtcgatacgtcgaag
ccgaatccaaacggactggaatatgataatctgtatctcgatatgaatggcatcatacat
ccttgcttccatccagaggaccgccccggcccaacaagttttgatgaggttttccagtgc
atgtttgattacattgacaggctttttgtcatggtacgacctaggaaacttctttttatg
gctattgatggcgttgcaccaagagctaagatgaatcagcagcgttctagacgtttcaga
tcagctaaagatgcagcagatgcggctgctgaagaggaccgattgcggctagaatttgag
agggaaggaagaaagcttccaccaaagaaggaatcagaagtttttgattcaaatattatt
actcctgggactgagtttatgtctattctgtctgtagcactgcagtactacattcatctg
aggctaaattatgaccctggttggaagcatatagaagttatactttctgatgcaaatgtt
cccggtgaaggggagcataaaattatgtcatatatccgccttcaacgaaatctgcctggt
tttaatcctaatactcggcactgcttgtatggtctggatgcagatttgatcatgttagct
ctggccacgcatgaggtgcatttttcaattttgagagagattgtcttcactcctggacag
caagacaaatgcttcttatgtggccagatgggccatttagcagccgattgccaaggaaat
gccaaaagaaaatccggtgaatttgatgagaagggtgatagcgatgtagttgcaaagaaa
ccttaccagtttctcaacatctggactcttcgagagtatttggaatatgaatttagattg
cctagtcctcccttcgaggtggattttgagcgaatagttgatgatttcatctttatgtgt
ttctttgttggaaatgattttcttccacatatgccaacgctggaaatccgtgagggcgca
ataaatttacttatggctgtttataagaaggaatttaatgccatgcagggctatttgaca
gactcatggaagccgaatttgagcagagttgagcattttattcaggcagttgggtcttat
gaggatagaatatttcaaaagagagctcgcttacatcagcgtcaaacggaaaggatcaaa
cgtgaaaaagcacaagcaaggcgaggagatgatatggatcctcaagtgaaccctgatcag
atagtggctataaatcgctacaagggttcacgtcttgcttctggggcttccccttcccca
tttcaacagatccagtcttcttacaagtcccataatccacagcttagaagagaaggcaga
gaatctgggaaagctacttcagaaatatctaagtttaagaccaacaaaagtgttgtgcct
gagaatgcaggtgttaatgttcgagcacaaaaggttgctcgcatttcgacagagggtgca
actattgggagagcaattgttgaggctgagaacagtcttgaagtcgaaatgattgaaaac
aaggaagagctgaaaacaaagctgaaaggactgttacgggataaatctgatcttttcaac
actgaaaatccagaggaagacaaggttaaacttggagagccaggttggaaagaaagatac
tatgaggacaaattttctgccaaatcccctgaagaaattgagcttattagacgagatgtt
gttttacggtatacggaaggattgtgttgggtgatgcattattattatgaaggtgtttgc
tcatggcaatggttttacccctaccactatgcaccgtttgcttctgatctcaagggtttg
ggccagttgactatagaattcgaaattggcactcctttcaaaccctttgatcagctaatg
ggagtgtttccagctgcaagtgcccatgctctaccattgcattacaggaaattgatgagt
gatccaaattcacccattattgatttctatcccacagattttgaggttgacatgaatgga
aagagatattcttggcagggtattgctaagcttccttttatcgaggaagatcgtctgctt
gctgaaattaagaatgtacaacatactttgacggaggaagaaattcggcggaatagcact
atgtttgaaatgctttttgttaatgtgtcacatcctctctctccatatatattctctctt
agcaatcaacatggacaactatcagaaaaagatcgagctaaagtaatagaaaaaattgat
cctgttgccagtggtgggatgaatggatatctatctctttgtaatggggatccatgtcca
ccagtcttcaggtctcccattaaaggtttggaagatataatggacaaccaagtcatttgt
gcaatatacaaatttccagatgctcacaaacaccttactcaaccaccgtcaggggttgta
ttccctaaaaagactgttactatgggtgatttgaagccggcgcctgttctctggcacgaa
gatacaggcaggagaccctttgaaaatggaaggcaaaaccctccaggatctttctccggt
agacaacttggcgacgcagctcatcgtttagtcacaaatagcttgcaaattcgaacggga
agagagctcaatgatattgaggctagaaggcaggctcatccaccatcacataatccacat
tcttctgcttcatttccacatccaaatggaaggcaacattcatttgatgtcagagcagag
caacattccgtcggccagtcgcaacggtacggtgttgtttctgcgtcaacttatcgttac
gagcgacacgaaaatcgtcaattcgaaagaaatgaatatggtagtagacctcaagctcca
cagcacagtagacactgggagcaaagagcccctgctccaagccacctacagtatggtgca
tcggcgtaccccgtcgccgcaagaaatgtagtccagcaacctattcatggtagcttccct
ccacggtcgggatatagggatgactatggtggtttccgtgcgtatggactccagcagcca
tggaatccacagtatgatcctaggagaggaccttcaagtcaagctcctgtgggaagaaca
aatactaacttgcagcaaatggataataataggtatgttgtattagatagaggctataac
aggaggccgacgcctcggcctccgccgccacccggctatggccattactag
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integrated database retrieval system
