KEGG   Dendrobium catenatum: 110100303
Entry
110100303         CDS       T05027                                 
Name
(RefSeq) DNA ligase 4 isoform X1
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
dct  Dendrobium catenatum
Pathway
dct03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dct00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    110100303
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dct03400]
    110100303
Enzymes [BR:dct01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110100303
DNA repair and recombination proteins [BR:dct03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     110100303
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 DNA_ligase_A_C PTCB-BRCT BRCT RNA_ligase DNA_ligase_IV
Other DBs
NCBI-GeneID: 110100303
NCBI-ProteinID: XP_020683406
LinkDB
Position
Unknown
AA seq 1108 aa
MTDSTVRFGLLCSMFEAMGRDRSAVKKRNRFRTFLERVYTGRDYFSAIRLILPSLDRERG
TYGLKESALAAALVDALAISKDSEDALRLINWRKGGARTGANVGNFALVAADILQRRQGS
ASGGLTIREVNDALDQLSLREGRGDKAAVLSGLIKKTNAVEMKWILMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLKDKGQRHKRQDIEVGKAVRPQLAMRISDATTAW
KKFHGKQIVAECKFDGDRIQIHRNGKDIHFYSRNFLDHTEYLHGMSDAILQNILVDRIIL
DGEMLVWDTSTNRFAEFGSNQEIAKAAIQGLQGDRQLCYVAFDILYAGDTSVIHQSLTER
HELLQKVVKPLRGRLEILVPSDGLNVRCPVGQPCWSIIVNCVEDVEKFFKETVENRDEGI
VLKDLSSKWEPGDRSGKWLKLKPDYIHAGADLDVLIIGGYFGSGRHGGEVAQFLLGLAER
SDSGSFPKRFLSFCRVGSGLSDDDLDILITRLKPYLRKNEYPKRVPHFYEVTNNSKERPD
VWVESPDKSVILSITSDIRTIKSEVFAAPYSLRFPRIQRVRYDKQWHECLDVESFRDLVQ
SSNGTTQRGVNQGALQLVNAKPKRLSRKGEKTTISVITPQSIQSDISVVKKTLIFANMMF
YFVNVPPSSSVDYFHKLVIENGGNFSMNLNDTVTHCIAAEKKGIKYQAAMHHGDIIHYSW
VLDCCNKKKLVHIQPKYFLFFADSSKKKHQEEIDAFSDYYYWDIDIEDIKQIFCNMIGSG
KSKMIENYRKKYLPVRRLGLFHGCFIYLHEMPVRNTDLKVISELAVRRMKLEINMHGGNV
CNDLETATHLLVYAVLGSHDFDEILESIPSNQRRLLHQKKLYVLVHNWLEDSLDKSVRLP
ENDYNLKPDSLEELIVEEKSNPAFPAIKCEAEDQNSAASGKRKRGRRAAGRANVGRPVHR
PTRRTRPKIGKRSVKLGSDGSESSDCLEAAPSKHAKDENLTGQVQKTASEIQDEAERKQE
VSDRPVEQSDSMKFLEIGSKSGDKLEVRTDPIHAMLLDMIPSLSQTQKRHREDVDVSINE
DKKPQQETNPVKKKVSYKKAADELLKDW
NT seq 3327 nt   +upstreamnt  +downstreamnt
atgacggactccacggtacgcttcggcctgctgtgcagcatgttcgaggcgatgggccgg
gaccggtcggcggtgaagaagcggaaccggtttcggacatttttggaaagggtctacacc
ggccgggactacttcagtgctatacgccttatcctcccttccctcgatcgcgagcgcggt
acttacggccttaaggagtccgctctcgcagccgcgctggtggatgccctcgccatatcc
aaggactccgaagatgccctccgtcttatcaactggcgcaagggcggggcgcgcaccgga
gccaacgttggaaacttcgcactcgttgccgccgatattttgcagcggaggcagggttcg
gcttccggagggctcacgatcagagaggtgaacgacgcgcttgatcagctttcattgagg
gagggcaggggagacaaagctgcggtcctttcaggtctcattaagaaaacaaatgcagtg
gaaatgaaatggattctaatgatcatactaaaagatttgaagctgggaattagtgagaag
agtatttttcatgagtttcatccagatgctgaagaccttttcaatgtgacttgtgacctt
aagcttgtttgtgaaaagttgaaagataagggtcaacggcataaacgacaggatatagaa
gtggggaaagctgttaggcctcagctggctatgcggattagtgatgctactactgcatgg
aagaagttccatggtaagcagattgttgcagagtgcaaatttgacggtgatcgcattcaa
atccacagaaatggaaaagatatacacttctattctcggaattttctggaccatacagaa
tatttacatggaatgtctgatgctattttgcaaaacattttggttgacaggattatacta
gacggtgagatgctggtttgggatacttccaccaatcgctttgctgagtttggttcgaac
caggaaatagcgaaggcagcaatacagggattacagggtgataggcagttatgttatgtt
gcttttgatatactgtacgctggagacactagtgttattcaccagagtttgactgaacga
catgaactgcttcagaaagttgtaaaaccattaaggggtcgcttagaaattttggtgccc
agtgatggtcttaatgtacgctgtcccgttggtcagccatgctggtctattattgtcaat
tgtgtggaagacgttgagaagtttttcaaagaaacagttgaaaacagagatgaggggatt
gtgctgaaagatcttagttcaaaatgggaacctggtgaccgaagtgggaaatggttgaag
ttgaagcctgattacatacatgctggtgctgatcttgatgttcttattataggtggttat
tttggctctggtcgtcatggcggagaggtggctcagtttctgcttggtctggcggagcgc
tctgattctggaagtttccccaaaaggttcctttctttctgtcgagtgggttctggtctt
tcagatgatgatcttgatattctcattacgagattgaagccctacttaaggaagaatgag
taccctaaaagagtacctcatttctatgaagtaacaaataattcaaaagagagaccagat
gtttgggttgagagccctgataagtcagtcatactctctattaccagtgatatcagaaca
ataaaatctgaggtttttgctgcaccctacagtttgaggtttccacgcatacaacgtgtg
agatatgacaagcaatggcatgagtgccttgatgttgaatcatttagggatttggtgcag
tcaagcaatggcactacgcaaaggggagtaaatcaaggagctttgcaactcgttaatgcc
aagcctaaaagattatcaaggaagggagagaaaacaaccatttctgtcattacaccccag
tctatccagtctgacatctctgttgtaaagaaaacgttgatatttgcaaatatgatgttc
tattttgtgaatgttcccccatcttcttcagtagattatttccacaaactagtgattgag
aatggaggaaatttttccatgaatcttaatgatacagtaactcattgcattgcagctgag
aaaaaaggcatcaaatatcaggcggccatgcatcatggtgatatcatccattattcttgg
gttttggactgttgcaataagaagaaattagtgcatatacaacccaagtacttcttgttt
tttgctgattcttccaagaagaagcaccaagaggagattgatgcattctctgattattat
tactgggacattgacatcgaagacataaaacagatattttgcaatatgattggatctgga
aagtccaaaatgattgagaattacaggaagaaatatcttccagtgagaagattgggcttg
tttcacggttgtttcatttacttgcatgaaatgcctgtcaggaataccgacttaaaagtt
atatcagagctggccgtaagaaggatgaaacttgaaattaacatgcacgggggtaatgtt
tgcaacgatcttgaaactgcgacacatttattagtttatgcagtgcttggatcacatgac
tttgatgagatacttgaaagcattccatcaaatcaacgccgccttttacaccagaagaaa
ttatatgttttggtacataattggttagaagattccttggataaaagtgtcaggttacct
gaaaatgattataatctaaagccagattcattggaagaactgatagttgaggaaaaaagc
aatccggccttcccagcaatcaaatgtgaagctgaagatcaaaactctgctgcatctgga
aagagaaaaagagggagacgagctgcaggaagagctaatgttggaagaccagttcacaga
cctacccgtcgaacgcggccgaagattgggaagcgttcagtaaagctgggttcggatggt
tctgaaagcagtgactgtttggaagcagctccatcaaaacatgccaaagatgaaaattta
actggccaagtccagaaaactgcaagtgaaatacaagatgaagctgaaaggaaacaagaa
gtttcagataggcctgtagaacaaagtgattctatgaaatttctggaaattggaagtaag
tcgggagataaattggaggtaaggactgacccaattcatgcaatgctgttagatatgata
ccaagtcttagccaaacccagaaaaggcatcgagaagatgttgacgtttctatcaatgag
gataagaaaccacagcaggagacgaatccagtgaagaagaaagtaagctacaaaaaagct
gcagatgagcttcttaaagattggtga

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