Dendrobium catenatum: 110100303
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Entry
110100303 CDS
T05027
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dct
Dendrobium catenatum
Pathway
dct03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110100303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dct03400
]
110100303
Enzymes [BR:
dct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110100303
DNA repair and recombination proteins [BR:
dct03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110100303
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
PTCB-BRCT
BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
110100303
NCBI-ProteinID:
XP_020683406
LinkDB
All DBs
Position
Unknown
AA seq
1108 aa
AA seq
DB search
MTDSTVRFGLLCSMFEAMGRDRSAVKKRNRFRTFLERVYTGRDYFSAIRLILPSLDRERG
TYGLKESALAAALVDALAISKDSEDALRLINWRKGGARTGANVGNFALVAADILQRRQGS
ASGGLTIREVNDALDQLSLREGRGDKAAVLSGLIKKTNAVEMKWILMIILKDLKLGISEK
SIFHEFHPDAEDLFNVTCDLKLVCEKLKDKGQRHKRQDIEVGKAVRPQLAMRISDATTAW
KKFHGKQIVAECKFDGDRIQIHRNGKDIHFYSRNFLDHTEYLHGMSDAILQNILVDRIIL
DGEMLVWDTSTNRFAEFGSNQEIAKAAIQGLQGDRQLCYVAFDILYAGDTSVIHQSLTER
HELLQKVVKPLRGRLEILVPSDGLNVRCPVGQPCWSIIVNCVEDVEKFFKETVENRDEGI
VLKDLSSKWEPGDRSGKWLKLKPDYIHAGADLDVLIIGGYFGSGRHGGEVAQFLLGLAER
SDSGSFPKRFLSFCRVGSGLSDDDLDILITRLKPYLRKNEYPKRVPHFYEVTNNSKERPD
VWVESPDKSVILSITSDIRTIKSEVFAAPYSLRFPRIQRVRYDKQWHECLDVESFRDLVQ
SSNGTTQRGVNQGALQLVNAKPKRLSRKGEKTTISVITPQSIQSDISVVKKTLIFANMMF
YFVNVPPSSSVDYFHKLVIENGGNFSMNLNDTVTHCIAAEKKGIKYQAAMHHGDIIHYSW
VLDCCNKKKLVHIQPKYFLFFADSSKKKHQEEIDAFSDYYYWDIDIEDIKQIFCNMIGSG
KSKMIENYRKKYLPVRRLGLFHGCFIYLHEMPVRNTDLKVISELAVRRMKLEINMHGGNV
CNDLETATHLLVYAVLGSHDFDEILESIPSNQRRLLHQKKLYVLVHNWLEDSLDKSVRLP
ENDYNLKPDSLEELIVEEKSNPAFPAIKCEAEDQNSAASGKRKRGRRAAGRANVGRPVHR
PTRRTRPKIGKRSVKLGSDGSESSDCLEAAPSKHAKDENLTGQVQKTASEIQDEAERKQE
VSDRPVEQSDSMKFLEIGSKSGDKLEVRTDPIHAMLLDMIPSLSQTQKRHREDVDVSINE
DKKPQQETNPVKKKVSYKKAADELLKDW
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgacggactccacggtacgcttcggcctgctgtgcagcatgttcgaggcgatgggccgg
gaccggtcggcggtgaagaagcggaaccggtttcggacatttttggaaagggtctacacc
ggccgggactacttcagtgctatacgccttatcctcccttccctcgatcgcgagcgcggt
acttacggccttaaggagtccgctctcgcagccgcgctggtggatgccctcgccatatcc
aaggactccgaagatgccctccgtcttatcaactggcgcaagggcggggcgcgcaccgga
gccaacgttggaaacttcgcactcgttgccgccgatattttgcagcggaggcagggttcg
gcttccggagggctcacgatcagagaggtgaacgacgcgcttgatcagctttcattgagg
gagggcaggggagacaaagctgcggtcctttcaggtctcattaagaaaacaaatgcagtg
gaaatgaaatggattctaatgatcatactaaaagatttgaagctgggaattagtgagaag
agtatttttcatgagtttcatccagatgctgaagaccttttcaatgtgacttgtgacctt
aagcttgtttgtgaaaagttgaaagataagggtcaacggcataaacgacaggatatagaa
gtggggaaagctgttaggcctcagctggctatgcggattagtgatgctactactgcatgg
aagaagttccatggtaagcagattgttgcagagtgcaaatttgacggtgatcgcattcaa
atccacagaaatggaaaagatatacacttctattctcggaattttctggaccatacagaa
tatttacatggaatgtctgatgctattttgcaaaacattttggttgacaggattatacta
gacggtgagatgctggtttgggatacttccaccaatcgctttgctgagtttggttcgaac
caggaaatagcgaaggcagcaatacagggattacagggtgataggcagttatgttatgtt
gcttttgatatactgtacgctggagacactagtgttattcaccagagtttgactgaacga
catgaactgcttcagaaagttgtaaaaccattaaggggtcgcttagaaattttggtgccc
agtgatggtcttaatgtacgctgtcccgttggtcagccatgctggtctattattgtcaat
tgtgtggaagacgttgagaagtttttcaaagaaacagttgaaaacagagatgaggggatt
gtgctgaaagatcttagttcaaaatgggaacctggtgaccgaagtgggaaatggttgaag
ttgaagcctgattacatacatgctggtgctgatcttgatgttcttattataggtggttat
tttggctctggtcgtcatggcggagaggtggctcagtttctgcttggtctggcggagcgc
tctgattctggaagtttccccaaaaggttcctttctttctgtcgagtgggttctggtctt
tcagatgatgatcttgatattctcattacgagattgaagccctacttaaggaagaatgag
taccctaaaagagtacctcatttctatgaagtaacaaataattcaaaagagagaccagat
gtttgggttgagagccctgataagtcagtcatactctctattaccagtgatatcagaaca
ataaaatctgaggtttttgctgcaccctacagtttgaggtttccacgcatacaacgtgtg
agatatgacaagcaatggcatgagtgccttgatgttgaatcatttagggatttggtgcag
tcaagcaatggcactacgcaaaggggagtaaatcaaggagctttgcaactcgttaatgcc
aagcctaaaagattatcaaggaagggagagaaaacaaccatttctgtcattacaccccag
tctatccagtctgacatctctgttgtaaagaaaacgttgatatttgcaaatatgatgttc
tattttgtgaatgttcccccatcttcttcagtagattatttccacaaactagtgattgag
aatggaggaaatttttccatgaatcttaatgatacagtaactcattgcattgcagctgag
aaaaaaggcatcaaatatcaggcggccatgcatcatggtgatatcatccattattcttgg
gttttggactgttgcaataagaagaaattagtgcatatacaacccaagtacttcttgttt
tttgctgattcttccaagaagaagcaccaagaggagattgatgcattctctgattattat
tactgggacattgacatcgaagacataaaacagatattttgcaatatgattggatctgga
aagtccaaaatgattgagaattacaggaagaaatatcttccagtgagaagattgggcttg
tttcacggttgtttcatttacttgcatgaaatgcctgtcaggaataccgacttaaaagtt
atatcagagctggccgtaagaaggatgaaacttgaaattaacatgcacgggggtaatgtt
tgcaacgatcttgaaactgcgacacatttattagtttatgcagtgcttggatcacatgac
tttgatgagatacttgaaagcattccatcaaatcaacgccgccttttacaccagaagaaa
ttatatgttttggtacataattggttagaagattccttggataaaagtgtcaggttacct
gaaaatgattataatctaaagccagattcattggaagaactgatagttgaggaaaaaagc
aatccggccttcccagcaatcaaatgtgaagctgaagatcaaaactctgctgcatctgga
aagagaaaaagagggagacgagctgcaggaagagctaatgttggaagaccagttcacaga
cctacccgtcgaacgcggccgaagattgggaagcgttcagtaaagctgggttcggatggt
tctgaaagcagtgactgtttggaagcagctccatcaaaacatgccaaagatgaaaattta
actggccaagtccagaaaactgcaagtgaaatacaagatgaagctgaaaggaaacaagaa
gtttcagataggcctgtagaacaaagtgattctatgaaatttctggaaattggaagtaag
tcgggagataaattggaggtaaggactgacccaattcatgcaatgctgttagatatgata
ccaagtcttagccaaacccagaaaaggcatcgagaagatgttgacgtttctatcaatgag
gataagaaaccacagcaggagacgaatccagtgaagaagaaagtaagctacaaaaaagct
gcagatgagcttcttaaagattggtga
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