Dendrobium catenatum: 110115381
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Entry
110115381 CDS
T05027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
dct
Dendrobium catenatum
Pathway
dct03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dct00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110115381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dct03041
]
110115381
Enzymes [BR:
dct01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110115381
Spliceosome [BR:
dct03041
]
Complex A
U2 snRNP components
U2 related factors
110115381
Complex B
110115381
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
APH
FeoA
Motif
Other DBs
NCBI-GeneID:
110115381
NCBI-ProteinID:
XP_020704256
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MGEVENIKQRSSRESTKEVLGRGDRDRERHREKDKARDRDYARSDRDRESQRSEKERERE
RSDDEKYRERRDRDSRYQDRERKSRDRDKEKERDREDRDRDKERAREREEREDREKDRAR
RREEREREREREDRERERERERAREERARDRERERVREKRRELERDEEDDGRDHDRKRRR
REESHERERERSNRHREGSADVHRKGDDDEAEAKEKKTREQDLEEEQRKLDEEMDKRRRR
VQEWQELKRKKEEQEREKDGKVNVEELNQTGKNWTLEGESDDEEADAVKSENDADGDEVA
KDVGSVRNDATSDVMDIDYENRGAVSNGVDVADGEDEIDPLDAFMNSMVLPEVEKLQSAE
SAPVKSVDAKLGSQERNKEGLSNGIQSKKGVKNPLGRILPDEDSAPEDEDLGNEVPSEDE
DDEDFMKRVKKTKAEKLSIVDHSKIQYSPFRKNFYIEVKEIAKMSPDDVAAYRKQLELKV
HGKDIPKPIKTWNQTGLTSKILDTIKKLNFEKPMPIQAQALPIIMSGRDCIGIAKTGSGK
TLAFVLPMLRHIKDQPPVVPGDGPIALIMAPTRELVQQIHSDIKKFSKGLGFNCVPVYGG
SGVAQQISELKRGAEIVVCTPGRMIDILCTSAGKITNLRKVTYFVMDEADRMFDMGFEPQ
ITRIVQNTRPDRQTVLFSATFPRQVEILARKVLNKPIEIQVGGRSVVNKDIAQLVEVRQE
SDRFLRLLELLGEWYEKGKILVFVHSQEKCDSLFKDLLKHGYPCLSLHGAKDQTDRESTL
SDFKSNVCNLLIATSVASRGLDVKELELVVNFDVPNHYEDYVHRVGRTGRAGRKGMAVTF
VSEDDAKYAPDLVKALELSEQAVPEDLRALADTFMAKVREGMEQAHGTGYGGSGFKFNEE
EDEASKAAKKAQAREYGFEEDKSDSDSDDDGVRKAGGDLSQAAILAQAAALAQAAKAGIS
SIPANVATAQLLSTSGLPVATMPSLAGLPGASLPGDAAARAAALAAAMNLQHNLAKIQAD
AMPEHYEAELEINEFPQNARWKVTHKETLGPISEWTGAAITTRGQYYPPGKFPSSMERKL
YLFIEGPTESSVKKAKAELKRVLEDYTAQSLSLPGSAQPGKYSVL
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaggtggagaacattaaacagagatcaagcagggagagtacgaaggaggtttta
gggagaggagatagggatagagaaagacaccgggaaaaagataaggcaagggatcgcgat
tatgcgagaagcgaccgcgatcgggagagtcagcggtcggagaaggagcgggaaagggag
aggagcgacgatgagaagtaccgggaaagaagagatagggattcccgctatcaggatcgg
gagcggaagtccagagatcgcgataaggagaaagagagggatcgagaagatagggatagg
gataaggagagagcaagagagcgggaggaaagggaggacagggagaaggatagggcgaga
aggcgggaggagagagagcgggaaagagaacgagaagacagagagagggagcgggagagg
gagagggctagggaggagagggcgagagatagggaaagagagagggtcagggagaagcga
cgggagttggagagagatgaggaggatgatggaagggaccatgataggaagaggcgcagg
agagaagaatctcatgaaagggagagggagcgcagcaacaggcatagagaaggaagtgcg
gatgtccacaggaaaggtgatgatgacgaggctgaggccaaggagaaaaagacccgagag
caagatctagaagaagagcagcgcaaattggatgaggagatggataagaggcggcgtaga
gttcaagagtggcaggagcttaaaaggaagaaagaggagcaggaaagagaaaaggatggg
aaggtaaatgttgaggagcttaaccagactggtaaaaattggactcttgaaggggagtcc
gatgatgaagaagcagatgcagttaagtctgagaatgatgctgatggtgatgaagtggct
aaagatgtgggttctgtgcggaatgacgctactagtgatgtaatggacattgattatgag
aatagaggtgctgtgtcaaatggagttgatgtcgctgatggggaagatgaaattgaccca
cttgatgctttcatgaattccatggtactgcccgaagtggagaaactgcagagtgcagag
agtgcaccggtgaaatcagttgatgcaaagctgggttcacaagagaggaataaggaaggc
cttagtaacgggattcaatctaaaaaaggtgtcaaaaatccattgggaaggatacttcct
gatgaagactctgccccagaggatgaggatcttggaaatgaggttccttctgaagatgaa
gatgatgaagatttcatgaaaagagtgaagaagacgaaggctgagaagctctccatcgtt
gatcattctaagattcagtactcgcctttcaggaaaaatttttatattgaagtgaaggaa
atcgctaagatgtcgcctgatgacgttgcagcatacagaaaacaacttgaattaaaggta
catggaaaagatatccctaagcctataaaaacatggaaccagactggattaaccagcaaa
attttagatacgattaagaagcttaactttgaaaaacctatgcccattcaagctcaagct
ctacccattattatgagcggtagagattgcataggaatagcaaagactggttcaggtaag
acactagcttttgtattacctatgttgaggcatattaaagatcaacctccagtagtacct
ggtgatggtcctattgcgcttataatggctcctacaagggagcttgtccaacaaatacac
agtgacattaagaaattttcaaagggcttgggcttcaactgtgtccctgtgtatggtgga
tctggtgttgctcagcaaatcagtgaattaaaacggggggcagaaatagttgtatgtact
cctggtagaatgatagatatactctgcacaagtgctgggaagattaccaacctaagaaag
gttacatactttgttatggatgaggctgatagaatgtttgatatggggtttgaacctcag
atcacaaggatagttcagaatactcgaccagatcgtcaaactgtactcttttcagctaca
tttcctcgtcaggttgagatattagccagaaaggttctgaacaaaccgattgaaatccag
gtcggaggaagaagtgttgtcaataaagatatagcccagttagttgaggttagacaagaa
agtgacaggttcttaaggcttctagagctgttaggagaatggtatgagaagggaaagatc
cttgtgtttgttcactcacaagaaaaatgtgattccttattcaaagacttacttaagcat
ggctatccttgcctttcacttcatggggctaaggaccagacagaccgggagtccaccctt
tcagatttcaagagcaacgtttgcaaccttctgattgctactagtgttgcttccagaggt
ctagatgtgaaggagcttgaactagttgtgaattttgatgttccaaatcactatgaagat
tatgtacatcgcgttggcagaacaggccgtgctggcaggaaaggtatggctgtcacattt
gtttctgaggatgatgctaagtatgcaccagaccttgtaaaagctctggaactttctgaa
caagctgtacctgaggatctaagagcacttgctgatacttttatggcaaaggtgagagag
ggcatggaacaagcacatggtactggctatggtggaagtggtttcaagttcaatgaagaa
gaagatgaagctagtaaagctgcaaagaaagctcaggcaagagaatatggatttgaagag
gataaatctgactcagactctgatgatgatggcgttagaaaagctggaggtgatttgtct
caagctgctattcttgctcaagctgctgctcttgctcaggctgcaaaggctggtatttct
tcaatacctgctaatgttgcaacagctcaattgctttctacttcaggtctccctgttgca
accatgccttctttagctggtctacctggtgcatctctgcctggtgatgctgctgcaagg
gctgctgccctagcggctgccatgaatttacagcacaatttagcaaagatacaagctgat
gcaatgccggagcactacgaggcagagctggagatcaatgaattcccacagaatgcccgg
tggaaggtcacccataaggagaccttgggtccaatatcagagtggactggcgctgcaatt
accacaaggggccagtattaccctcctggtaagtttcctagttccatggaacgcaagctt
tatctatttatagaaggccccaccgagtcttctgttaagaaagccaaagctgagttgaaa
agagtgcttgaggattacactgctcaatctctttctcttcctggttctgcacaacctggt
aaatattccgtcctttaa
DBGET
integrated database retrieval system
