Desulfitobacterium dehalogenans: Desde_0514
Help
Entry
Desde_0514 CDS
T02146
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ddh
Desulfitobacterium dehalogenans
Pathway
ddh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ddh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Desde_0514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddh03400
]
Desde_0514
Enzymes [BR:
ddh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Desde_0514
DNA repair and recombination proteins [BR:
ddh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Desde_0514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AFL98974
UniProt:
I4A4U0
LinkDB
All DBs
Position
522942..525380
Genome browser
AA seq
812 aa
AA seq
DB search
MTAELNPYNQKRNFAKTLEPEGIRVISQEDLKFVVQHHLARRDHYDLRLEWEGALLSWAV
PKGPSYDTRDKRLAVQVEDHPLEYRNFEGTIPKGEYGGGVVMLWDEGSWEPYGDVDEGLR
EGVLKFVLKGRRLKGKWALVRMKEKAGEKKDNWLLLKEKDEYAQTADGIAELTTSIRTGR
TMAEIEEGEDEKFTQNPFSSIEVQLAKLVHSIPEGKDWLYELKYDGYRIVAYIEGNSVRL
ITRNGHDYTERFRDVASSLLDWAEGRAMILDGEMVVTDPEGKTDFQALQNYLKNPRAKNL
TYILFDLLALDGADLRGHSLIDRKETLAGLMEDAPPNLHYSRHVRGKGKESYLAACEGGM
EGIIGKKADSLYSGARNGDWIKLKCAKRQEFVIGGYTLSHKKTSGISSLLLGVYEGEELV
YAGRAGTGLSEADMKELEEKFKSIKSRVAPFKAAPKPRSNEKITWLEPELVAEIQFAEWT
KEDRLRQASFKGLRGDKNPREIQREKADEEIQPQPVQKGRSPMKTNSNSIIIEGIKISSP
DKVIFAQPEITKVDVIRYYEKVAERMLPYVSHRVLSIVRCPKGVAQTCFYKKHPGPGSQG
IVTIPILTSDGGTEDYFYIENISGLIAEAQMGTLEFHIWGSRVDELEKPDLLVFDLDPDE
GMDLGTVRQGVRDIKDILAELSLNSYLKTSGGKGYHVVVPLKPAVSWEVFHDFARGVAQV
MEQKWPDRYTSNVRKAKRTNKIFIDWIRNGRGATSIAPYSLRARKGAGVSMPILWEELDM
VAPDGVDMAEALRRIEGSDPWQDFFQNQQRLK
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgactgcagaactcaatccgtacaatcaaaaaaggaattttgccaaaaccttggagccg
gaggggataagagtaatctcccaggaggatctgaaatttgtggtgcagcaccatctggcc
cgcagagatcactacgatctccgtctggaatgggagggagctcttttgagctgggcggtg
cctaagggaccttcctacgatacccgggacaaaaggctggctgtacaggtggaggatcat
cctctggaatacaggaattttgaagggaccattcccaaaggggaatatgggggcggtgtg
gtcatgctctgggacgaaggctcctgggaaccttatggagatgtggatgagggactccgt
gaaggggtgctgaagtttgtactaaaaggaagacggcttaaaggaaaatgggccctggtg
cggatgaaagaaaaggccggagagaaaaaagacaactggcttttacttaaagaaaaagac
gaatatgcccaaactgctgacgggattgccgaattaaccaccagcatcaggaccggacgc
actatggcggaaattgaagaaggggaggacgaaaagttcacccagaaccccttcagcagc
atcgaggtgcagctggccaaattagtccattccattcctgagggaaaagattggctttat
gagttgaaatacgacggctacagaatagtggcctatattgaaggaaacagcgtccggctg
ataaccaggaacggccatgattatacggaacgattccgggatgtagcctcttccctcctt
gattgggcggaggggagggccatgatcctggacggggaaatggtcgtcacagatccggag
ggcaaaacggattttcaggccctgcaaaactatctgaaaaacccccgggccaaaaatctg
acctatatcctctttgaccttctcgccttggatggggcggacctccggggacatagcctg
atcgacaggaaggaaactctggcggggttgatggaggatgctcccccaaaccttcactac
agcaggcatgtaagaggaaagggaaaagaaagttacctggcggcctgcgagggcgggatg
gaagggatcatcggaaaaaaagccgattccctctacagcggagcaagaaacggcgactgg
atcaaacttaaatgcgctaaaaggcaggaatttgtcatcggcggctataccctttctcat
aaaaaaaccagcgggataagctcccttctcctgggggtctatgaaggggaggaactggtt
tatgccgggcgtgccggtactggcctgagcgaagccgacatgaaagagcttgaggaaaag
tttaagagcatcaagagcagggtggcacccttcaaggcggcgcccaagcccaggtctaat
gaaaagatcacctggcttgagccggagctggtggcggaaatccaatttgcggaatggacc
aaagaggatcggctaaggcaggcaagcttcaaaggcctgcggggggataagaatccccgg
gaaatacaaagggaaaaagcagatgaggaaatacagcctcagcctgttcaaaaagggaga
agccccatgaaaaccaacagcaacagcattatcatcgaaggaatcaagatcagcagcccg
gacaaggtgatcttcgcccagcccgaaatcaccaaagtggatgtgatccgctattacgaa
aaggtggcggagcggatgctgccctatgtaagccacagggttctcagcattgtccgctgt
cccaaaggggtagcccagacctgcttctataagaagcatcctggtcccggcagccaggga
atcgtgaccatcccgattctgaccagtgacgggggaacagaagattacttctatattgag
aacatttccgggctgatcgccgaagcccagatgggcaccctggaatttcacatctggggg
agccgtgttgatgagctggaaaaacccgatctactggtctttgatctggatcctgatgag
ggaatggatctgggtacagtgcgccagggtgtgcgggatataaaagatattcttgccgaa
ctttccctgaactcctatctcaagaccagcgggggcaaagggtaccatgtggtggtccct
ttaaaacccgccgtctcctgggaggtctttcacgattttgccaggggcgtcgcccaggtt
atggagcagaagtggcctgatcgctatacaagcaacgtgagaaaggccaagcgcaccaac
aagatctttatcgactggattcgcaacggcagaggggccaccagcattgccccctattcc
ctgagagctagaaaaggagcgggggtgtccatgcctatcctctgggaggagctggatatg
gtggctccagatggggtcgatatggcggaggccctgcggaggatcgagggcagtgatcct
tggcaggattttttccagaatcagcagcggcttaaatga
DBGET
integrated database retrieval system
