Desulfitobacterium dehalogenans: Desde_3026
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Entry
Desde_3026 CDS
T02146
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ddh
Desulfitobacterium dehalogenans
Pathway
ddh03410
Base excision repair
ddh03430
Mismatch repair
ddh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ddh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Desde_3026
03430 Mismatch repair
Desde_3026
03440 Homologous recombination
Desde_3026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddh03400
]
Desde_3026
DNA repair and recombination proteins [BR:
ddh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Desde_3026
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Desde_3026
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Desde_3026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
ThiG
Motif
Other DBs
NCBI-ProteinID:
AFM01324
UniProt:
I4ABI9
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All DBs
Position
complement(3022877..3025285)
Genome browser
AA seq
802 aa
AA seq
DB search
MTKRIWTKPRPLPGLQDSSSSLPQRLGISPVVADILSQRGVGTEEEILEFLSPSLLNLNS
PFAFREMAKAVERLEQARAQEEKILIYGDYDVDGVTSTALLYKVLTDLGFKAVAYIPSRM
DEGYGLHKDAVLKASQADVKVIITVDCGITAVDEVEYARSQGIDMILTDHHEPPEILPQA
YTILNPKVKDSRYPFRELAGVGVAFKLAQALLETLDCGGTGAYAVLEILDLVALGTIADL
VPLTHENRTIVAYGLRQMENTIHLGLRTLLEECGLWGKPLKAGQIAFMVAPRINAAGRMD
SARAGLELLLTGHEDRAVELARFLSRENALRQDTEKDIFAEAVKILEEAPLPRVIVLSGK
NWHHGVIGIVASRLVERYYRPVFLVTEEEDIGKGSARGIGGYHVLDELKAQAELLEKFGG
HSQAAGFSLKPENIPLLCEALNQAAQNFPEDMFYERVRVDQCVPLEALDASLMRDLEHLA
PFGFGNPSPVLAGKDYPLYMADLVGKDQAHLKCMFGTQGEWEGIAFRKGEELGNILGSST
VDVAFGLDWNTFRGTQNIQLMIKDIQPKAPWQEDNDHSAALQEIALGPEEMAAGSPSSQG
LKVMDWRAKNREEWSKTLESWGASVALWDFTGSDPQRPETDLKADWAMIIGVPSSWNAVR
EIMRETQNQGGQGMIIAESKIEALVLKERTGYLSREDLVQLYRVLYDLAIKNNPFTWQVE
GIPLWQARTGLKILEELNLLRCLRHRPGAIHIEWIPAKKKLDLEGALRFRSAKKRWQETM
AFKEEYCTMPWPEFQTRLGRYR
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaagaatatggacaaaaccacgaccccttcctgggcttcaagatagcagcagc
tcactcccacagcgcttagggatttctccggtggttgcagacattttaagccagcggggc
gtcgggacggaagaagaaatcctggaatttctaagcccctccttactcaatttaaattcc
ccttttgcctttagagaaatggctaaggcagttgaacgtttagagcaggcacgggctcaa
gaagaaaaaatccttatctacggcgattatgatgtggatggggtaaccagtacggcatta
ctctataaagtattgacagatttagggtttaaggcggtcgcctatattcccagcaggatg
gacgaagggtatggattacataaggatgccgtattaaaagcttcccaagctgatgttaaa
gtgatcattaccgtggactgtggcattactgccgtggatgaagtggagtatgcccggtct
caggggatagatatgattcttaccgatcatcatgagccgcctgaaatcctgccccaagcc
tatactatcctgaatccgaaggttaaggactctagatacccttttcgggaactcgctgga
gtgggagtagcttttaagttggctcaggccttgttagagactttagattgcggtgggacg
ggagcctatgctgtcctggaaattttagatttagtagccttagggaccattgcggacctt
gtccccttaacccatgagaaccgtaccatcgtggcctatggcttacggcagatggagaat
accattcatttaggactgcgcactctacttgaggagtgtggtctatgggggaaacctctt
aaagcggggcagatcgcttttatggtggcgccgcgaattaatgctgccggtcggatggat
agcgccagagccggattggagctgttgctcacaggccatgaagatcgggctgtcgagtta
gcacggtttttaagccgggaaaacgccttgcgccaggacacagaaaaggatatctttgca
gaagcagtgaagattttagaggaagctccacttcccagggttattgttttatcgggtaag
aactggcaccatggggtcatcggaattgtggcttctcgcttggtggagcgctattatcgc
cccgttttccttgtcacggaggaagaggatataggaaaagggtccgccagagggatagga
ggctatcatgtactagatgaactgaaggctcaggcagagcttttggagaaattcggtgga
catagccaggctgccggtttctcgctgaaaccggagaatatcccccttctttgcgaggct
ttgaatcaagcagctcaaaatttcccggaggatatgttttatgaacgggttcgtgtggac
caatgcgtccctttggaggcccttgatgcttccttgatgcgcgatttagagcatcttgcc
cccttcggatttggtaatcccagtccggttctggccggaaaggattatcccctctatatg
gccgatctagtggggaaagaccaggctcatttaaaatgtatgttcggaacccaaggtgaa
tgggaaggaatagcttttcgcaaaggggaagagttagggaatattttagggtcttcaacg
gtggacgtagcttttggtttggactggaatactttccgaggaacccagaatatccagctg
atgattaaagatattcaacccaaggccccatggcaggaagataatgaccactcagcggct
ttgcaggagatcgctttgggaccggaggaaatggctgcaggaagcccatcttctcaaggc
ttgaaagtcatggattggagagctaaaaatcgggaagaatggagcaaaacccttgaaagc
tggggtgcttcagtcgccctttgggattttaccggatcagaccctcaacggcctgaaacg
gatctcaaggcagattgggctatgattataggggttccttcatcgtggaacgcagtgagg
gagatcatgagggagacccaaaaccaaggtggacaaggcatgatcattgccgagagtaag
attgaggccctcgtcttaaaagagcgaacgggttatttatctcgggaagatcttgtccaa
ttgtacagagtgttatatgatttggctattaagaataatccgttcacctggcaggtggag
ggaattcccctgtggcaagcccgaaccggcttgaaaatcttggaagagctgaatttgctc
cgctgtctgcgccatagaccgggtgccatccatatcgagtggatccccgccaagaaaaag
ctggatttggaaggggcgctgcgttttcggagtgccaaaaagcgctggcaggagaccatg
gcgtttaaagaagaatattgcactatgccttggccggagtttcagacaaggctgggccgg
taccgatag
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