Desulfitobacterium dehalogenans: Desde_3411
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Entry
Desde_3411 CDS
T02146
Name
(GenBank) RHS repeat-associated core domain protein
Organism
ddh
Desulfitobacterium dehalogenans
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
LysM
DUF6531
Collagen
TGFb_propeptide
Motif
Other DBs
NCBI-ProteinID:
AFM01694
UniProt:
I4ACK9
LinkDB
All DBs
Position
complement(3405552..3414989)
Genome browser
AA seq
3145 aa
AA seq
DB search
MRTRTTKKILSLVIAIIFFINGIFTDVALAQSGSEGNKKGNYYGRTLPAKEKIKNIPPQK
GKTKKPFKEPKELKQDPPYEHRFSKEQEKISRRTANSKTFNDRQGKATTFVFMDKIHFLN
ESGTYQDVDNTLVPVDQNKKGSKGKPASVNDSPANQSYENKANDFKASFPARLSKGHPLN
VSSAGASLGLIPLEGDFQNSTIQGNTILYHDVFDGIDYRYTVLNTRIKEDIIFNNYVDKT
TFSMSVKTEGLTLREENGAIYGYKKGSHDASWVFPAPYLIDASGIISTNVQMHLEKKLFT
SDQIIITMDQDWLAAPERAYPVILDPTLTIGAAAIQDTCVEEGSPALYTDNSFSYIGFDD
GITSGNIANHQSAHLRTRTFLKFNLPTLDEDQTITSAQFNMYKYTAWSDEPRTVELHQVK
EPFSITGLTWLNQPQETAWAAETTITGTTGYYQWDITGLLNTWYSGTPNEGIVLRYTEEM
KQAEVFYSADAAGNPTPYLEFTYEDQGSIDPNLPLEKPSIQLRPFTAANNNGLLQFVGLT
ADGMAQPDATVDYYTVGRGGGLSGSAQAAKDYLYPNFRPETLPELQALIAQGGSYNHYPG
QESNWQTSFWRLPEQDTLYHIEATFTDKEGKISGVGISDPFQIYQAKAKDLLPRVAHFYG
VEKRQLMQDNNMKDDLLTENNLIFIRAPKQNQGKPYTPKDLTDADKRRIDDLLAGRAKNC
EFGFEPINLLTGNFYYSATDVSIPDFGGPFQISRDYNSKMMTRRGPFGQGWTSILSQAIA
TLADGSLAYLRSDGSAITFSKKTDGTYKAPPGEIYTLEKTETGFRLKQKDQTTFSFARSG
LLTGIEDPRGNKTFLTYDEEDFLTLITSPSGKDFPVSMDPEGRITSITLPNRSTLSYTYD
PAGNLVTFQDADGEQTHYHYDEQGRMLSFTDPNGNPVIHNSYDEDNRITAQTDANGQKSR
IIYHEGYNETIDNNGNKTTYTYDEHYRTSQIMKPDGTREAYTYDEDNNLKTYQDPLGRIT
TYSYDQRGNRVEERRWDGLRQFYRYDAQNNLTSLTDFNGYTTDFAYDAQGDLLKRTTPDG
SLTEYTYNAQGQITSIKDPEGYITRYDYRGADLSQVIDPLGHTYQYWYNPLGQPVTLIDP
ESNLTRFAYDPRGKLLNTLLPDQSIHRYSYDPNGNNTAMTDPNQNVVLFSYDNMSRLTTV
QDPLGNLTEYTYDRNGNKIKETDPLGYIIRYTYDSLNRLIAITDQDHGVTHFERDALGRL
LAVTDPRGYRSTIAYDDRVDKPQTITTPLGQTSSYTYDALGNLLQTTHPDGTSQHYRYDS
LRRPIEITDISGVKTSLHYDRLGRVTSVEDSLGRDYHYSYDPNGNLLQSTDPLGYRVNYT
YNAQGLPLSRTNEEGQTTAYRYTSLNAVAELIEPGGAKHSFIYDPSGNLRTHTDALGHTT
TYIYDPLDRLAAIQDPLANITQFQYDPAGNLHAQIDALGNTTTYAYNGRGLAIKATDALG
NVSQFHYDASGNRTEQIDPAEGRYEWTYDAMNRLTGTTDPLGLHTVFDYDKMNRLVRQED
NGGNLRHLAYDPSGRLREEQDVLGRSTTYGYDLAGNLTTLTEVDGNTTILDYDPKGRLRT
VTDPEGKVTSLTYDGLDRITGKLEPGGRNTLYRYDPAGNLIEEQNPLGALQHYSYDLNHN
LIESQNARGFSKTYTYDPLDRPITSTDERGNQASFAYDPNHNLIRHTDALGNITQYAYDP
LDRPIMEVDALGFDSHYDYDRLGQLITFTDARDNQTHYEYNRHGMLTNTLDALQGVTAYQ
YDLNDNLLAFIDPLGAETRFTYDPVHRLTSVTDPEHYSRYFSYDAKGNLEQEFDSAGNIR
TSTYDIMHRQLSARNTAGHLTDYSYDTLGNLQAVTLPNGNTTTYDYDLLGRLTQVTDPEE
KVTQLSYDILGNTERIAHPGNQEVHYTYDPANNLDSTTNPLGETTRYGYNKNNLPESSTD
PLGHQTSYRYNPLNLLQEVADPLGNTTSFAYDPNTNLAALTDPNGHTTGYGYDPLNRLTQ
VTSPLGHSTRYGYDPADNLISATDGNDHTNNYTYNLRHELTSLTNPLGEQDSYTYNPVGT
LQSHTDPKGTTTNYSYDILNRLIGKTYTKPHLPEGVPAGGETPPAGGTGEGSESTADEDA
AEDSEDVEYEYNLMGSRVSLFGPEGVTDYEYDFMERLTYVSSPTAEEVSYDYDELGRKAR
VIYPDGKAVEYRYDLLNRIVSVTDWQGQETTTYDADGRRTETKLPNGIQVRYTYDAAHRL
LKLENIGAQGKLISGFTYTYDPKGNILTETQNQSGSVYKRTYTYDASDQVIAFSEEKDHE
RRLYTYSYDRAGNRLSQEIQGGNDSKRFAYQYNEADELITKTQGDGGNRIRYTYDPNGNL
IQATTQGNQSTTYFYDSENRLIQITEHQGKIQTFGYDSDGNRLYKTVGVEYEGYEAGSYE
AESEEEKISSLMPPLAANFGLFGLQKFIAANDKGNNGNGGDKGNSGNDGNKGNGGDKGNS
GNDGNNGKGGDKGNSGNDGNNGKGGDKGNSGNDGNKGNNGNNGNSGNNGNNGNKDNNGNS
SNSGNSGDKSNNGSNGNSGNKGNGGNTKVHDDGSDKVKGGDSGKHLGWYKTKQDAKEKPG
NPGLHLGWYKQAENPKGPKDPNHPNNPNNPKDPDDPTDPDNPDNPNPDKPLNKPDAYEVI
NYFNDLSVEHTQVLMTTDKEGVYRGVYTYGLERIAERDLAAVEGVPNDPLYYLYDGRGSV
TQLINDAGHVRDKYRYDAYGMPMPGGKVGPNTRLFNNPYGYNGEAHEQESGFQYLRARYY
DPDVGRFMSRDSYLGNVMEPLTLNRYAYVSNNPVMYADPSGHMREAGDSSGVIAMKQGKY
KPLEYTVTPGDTLGAIAPKHGTTVNTLVRMNNIADPNRIYVGQKIKIPDPSTGSRGDYVK
EKTAGRQDYNKVVCLEIPGPQGTGKAKIYASLQLSESDLEGPLQPVIRDFQSWVDQAHEK
NLDDMSLAERIAVPLFPSSELLSEVKIGIMPFGIGGVFKGAGKVISPSNAAKQIVNAERT
GTALIKSDPTHRAASYLTEKQLAAGKTFPLQGGDGVQRTLLQTPGGLNGKSGIYEYILEP
NGMVSHQRFIGKGIITGTPNQVVKP
NT seq
9438 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacaagaaccacaaagaaaatcctcagcttagtgattgccatcatctttttcatc
aacggtatcttcaccgatgttgccctagcccaaagcggcagcgaaggaaacaaaaaagga
aactactatggccgtaccttaccggccaaagaaaaaatcaaaaacataccccctcagaaa
ggaaagacgaaaaagccctttaaagaaccaaaagaactgaaacaggatcccccctatgag
caccgtttcagcaaggagcaagagaaaatcagccgcagaacagccaacagcaaaacattc
aacgatcggcaagggaaggccaccacctttgtcttcatggacaaaatccattttctcaat
gaatcaggcacctatcaggatgtggacaacaccctcgtgcctgtagaccaaaacaaaaaa
gggagcaaaggaaaaccggcgagtgtgaacgactctcccgcaaaccagagctatgaaaac
aaagccaatgacttcaaagcctcctttcccgcgaggcttagcaaaggacaccccctcaac
gtcagctccgccggggcctccctcgggctgatcccgctggaaggggacttccaaaacagc
accattcaaggcaataccatcctctatcacgatgtcttcgatggcatagactaccgctat
accgttctgaacaccaggatcaaagaagatattatcttcaacaactatgtggataaaact
acattcagcatgtccgtaaaaacagaaggccttacccttagagaagaaaatggtgctatc
tacggctataaaaaagggagccacgacgcctcttgggtgttcccggctccctatttaatt
gatgcctccggcatcatctcgaccaacgtccagatgcacctggagaaaaagctctttacc
agcgaccaaatcatcattacgatggatcaagattggctcgccgccccggagagggcctat
ccggtaatccttgacccgaccctcactatcggcgcggcagccatccaagatacctgcgtt
gaagaaggctctccggcactctataccgataatagcttttcctacatcggtttcgatgac
ggaatcaccagcggcaacatagctaaccatcaaagtgctcatttaagaacaagaaccttt
cttaaatttaacctccccaccctagacgaagaccaaacgatcacctccgcccaattcaat
atgtataaatacaccgcttggagtgacgaaccccgcactgtagaactgcatcaagtcaaa
gaacccttttcgatcaccggtctcacctggcttaatcagccccaagagaccgcatgggcc
gccgagaccaccatcaccggcacgaccggctactaccaatgggatataaccggacttctt
aacacgtggtacagcggtacacccaacgagggcatcgttctccgctacaccgaagaaatg
aagcaggctgaagtattctattcagccgatgccgcaggcaaccccaccccttaccttgaa
ttcacctatgaagaccaaggcagcatcgatccgaatctccccttagaaaaaccatccatc
cagctcagaccctttaccgcagccaataacaatggcttgcttcagtttgtcggtctgact
gccgacggaatggcccaaccagacgctaccgtcgattattacaccgtcgggagaggtggg
ggattatccggcagcgcccaagccgccaaggactacctttatcctaattttaggcccgaa
accctccccgaactccaagccctgatcgcccagggcggctcatataaccactacccaggc
caagagagcaactggcaaaccagcttttggcgactccctgaacaggacacactctaccat
attgaagccaccttcaccgacaaagaaggaaagatcagcggggtgggcatcagtgacccc
ttccagatctatcaggccaaagccaaagatctgctgccccgcgtcgcccacttttatggt
gtggaaaaacgtcagctcatgcaagataacaacatgaaagacgacctgctcaccgagaac
aacctcatcttcatccgcgccccaaagcaaaaccaagggaaaccctataccccgaaagac
cttaccgatgctgataaaaggcgcatcgacgacctcctcgccggacgggccaagaattgt
gaattcggctttgaaccgatcaacctcctcaccggcaacttttactatagcgccacagat
gtcagtatccccgatttcggcggccccttccagatcagccgagactataactcaaaaatg
atgacccggcgcggccccttcggccaaggctggacctccatcctcagccaagccatcgca
acactggctgacggctccctcgcttacctgcgcagcgacggcagtgccatcaccttcagc
aaaaaaaccgatgggacttacaaagccccgcccggtgaaatctacaccttagagaaaacc
gaaaccggctttcgcctcaaacaaaaagatcaaaccaccttctcctttgcccgctccggc
cttctcaccggcatcgaagacccgcggggcaataagaccttcctcacctatgatgaggaa
gatttcctcaccctgatcacctccccatccggcaaagatttcccagtcagcatggacccc
gaaggacgcatcacctccatcaccctccccaaccggagcaccctttcctacacctatgac
ccagccggcaacctggtcactttccaagatgctgatggcgaacagacccactaccactat
gatgagcaagggcggatgctctcctttaccgatcccaatggtaacccagtaatccacaac
agctatgacgaagacaaccgcatcaccgcccaaaccgacgccaacggccagaaaagccgg
atcatctaccatgagggctataacgaaaccattgacaataacggcaacaaaaccacctac
acttatgacgaacactaccgcaccagccaaatcatgaaaccggatggaacaagggaagct
tacacctatgatgaggacaacaacctcaaaacctaccaagatccccttggccggatcact
acctacagctatgatcagcggggtaaccgcgtcgaggaaagacgctgggacggcttaagg
caattctaccgctatgatgctcagaacaatctcacctcgctcaccgattttaacggctac
accactgattttgcctatgacgctcagggtgacctcctaaagcgcaccactccggacggc
agcttgacggagtatacatacaacgcccaaggtcaaatcacgagcatcaaagatcctgaa
ggctacatcacccgctatgactaccgcggtgccgatctcagccaagtgatcgatcccttg
ggccatacctaccaatactggtataaccccctcggtcaacccgtcaccctcatcgatccg
gaaagcaacctcacccggttcgcctatgatcccagaggaaaacttctcaataccctgctc
cctgaccagagtatccatcgctacagctatgatcctaatggcaacaacaccgccatgacc
gaccctaaccaaaatgtagtccttttcagctatgacaacatgagccgtttaacgactgtc
caagatcctttagggaatctcaccgaatatacctatgaccgtaatggcaacaaaatcaag
gaaaccgatccgttaggctacataataaggtacacctatgactccctcaatcgcctgatc
gcaatcaccgaccaggaccacggcgtgacccatttcgagcgcgatgctctcggacgcctc
ctcgcggtcaccgatccgcggggttaccgcagcaccattgcttatgacgaccgagtggac
aaaccgcaaaccatcaccacccccctcggacaaacctccagctatacctatgatgccctt
ggcaatcttctccaaaccacccaccccgatggcacctcccagcattatcgctatgactcc
ctccggcggcccatcgaaatcacggacatcagcggtgtcaaaaccagcctccattatgat
cgcctgggccgggttacgagtgtcgaggacagcctcggcagggattaccactacagctat
gatccgaatggcaacctgctccaaagcacggatcccttaggctatagggtcaattatacc
tacaatgcccaaggtctgcccttaagccgcaccaatgaggaaggtcagaccaccgcctat
cggtataccagcctgaatgctgtggccgaactcatcgaaccaggcggcgctaaacactcc
ttcatttacgatcccagcggcaacttacgtacccacaccgatgccttaggtcacaccacc
acctacatctatgaccccctcgatcgcctcgcagcaatccaggatcccctggccaatata
acccaatttcagtatgatcccgccggcaatctccacgcccagatcgatgcccttggcaac
accaccacctatgcctacaacgggcgcggcctcgccatcaaggccaccgatgccctcggc
aatgtgagccaattccactacgatgctagcggcaaccgtaccgaacagatcgacccggca
gagggccgctatgagtggacttatgacgccatgaaccgtctcaccggcaccaccgatccc
ctgggactccacacagttttcgactatgataagatgaatcgtcttgtgcgccaggaagac
aacggcggcaacctgaggcacctcgcctatgatccctctggccgcctccgtgaggagcaa
gatgttcttggccgcagcaccacctacggttatgacctggccggcaacctcaccaccctt
actgaagtggatggcaataccaccatcttggactatgacccgaaaggccgtctgagaacc
gtcaccgacccggaagggaaagtcacctccctcacctatgatgggttggaccggatcaca
ggcaaactggaaccaggaggtaggaatactctctaccgctatgacccggccggtaacctg
atcgaggagcaaaaccccctcggggctcttcaacactatagctatgacctcaaccataac
ttaatcgagtcccaaaacgccaggggattcagcaagacctatacctacgaccccctggac
cggcccatcacctccactgatgaacgcggaaaccaggccagctttgcctatgatccaaac
cataacctgatccggcacaccgatgccttaggcaacatcacccagtatgcctatgacccc
ctggaccgccccatcatggaggtcgatgccctcggctttgacagtcattacgactacgac
agactgggacaactcatcacctttaccgatgcccgggataaccagacccattacgagtac
aaccggcatggcatgctcactaataccctcgacgcccttcagggcgtgacggcttaccag
tatgatctgaacgacaatctcctcgccttcatcgatcccctgggagccgagacccgattc
acctatgatcctgtccaccgtttaacctcagttactgatccggagcactatagccgttat
ttcagctacgatgccaaggggaacctggagcaggaattcgactccgccggtaacatcaga
acctctacctatgacatcatgcaccggcagctcagcgcccggaataccgccgggcatctc
accgactacagctatgacaccctaggcaacctacaagcggtgaccttgcctaacggcaat
accaccacctatgactacgatctgctgggccgacttacccaggtcaccgacccggaagag
aaagtcactcagctgagttatgacatcctcggcaacaccgaacgcattgcccatcccggg
aatcaggaggttcactatacctatgacccggccaataacctggacagcacaaccaatccc
ttaggggaaaccacccgctacggctacaacaagaacaacctgcccgaatccagcaccgat
cccttggggcaccaaacgagttaccgctataaccctctcaacttactccaggaggtcgca
gatcccctggggaatacgaccagctttgcctatgaccccaataccaacctcgcagccctc
accgatcctaacggacataccaccggctatggctatgaccccttaaaccggctgacccaa
gtgacgagtccgctcggccatagcacccgctacggctatgacccggccgacaatctcatc
tcggccaccgatgggaatgaccacaccaataattatacctacaatcttaggcatgaactc
acctccctgaccaatcctctgggggaacaggacagctacacttataacccggtggggacc
ctgcaaagccataccgatcccaagggcaccaccacgaactatagctatgacatccttaac
cgtttaataggcaagacttatacaaaaccgcacctcccggagggtgtcccagccgggggt
gaaacaccccctgccggtggcacgggggagggcagcgaaagcaccgctgatgaagacgca
gctgaagacagtgaagatgttgagtatgagtacaaccttatgggcagccgggtcagcctg
tttggcccagaaggagtcactgactacgagtatgacttcatggagcgcttaacctatgtc
agctcccccactgccgaagaagtgagctatgactatgatgaactgggccgcaaagcccga
gtcatctatccggacggtaaggctgtcgagtaccgctatgatctgctgaaccgtattgtt
tccgtcaccgactggcaggggcaagaaaccacgacctatgatgccgacggcaggcgtacg
gaaaccaaacttccgaacggtatccaagtccgttatacctatgatgcggcccataggctg
ctcaagctggaaaatatcggtgcccagggcaaattgatctccggctttacttacacctat
gacccgaaggggaacattctcaccgaaacccaaaaccaatccgggtcggtatataagcgc
acctacacctatgacgcctcggatcaagtcatcgctttcagtgaagaaaaagaccatgaa
cgaaggctctacacctatagttatgaccgggccggcaaccgcctgagtcaggagatccaa
gggggaaatgacagcaaacgctttgcctaccagtacaatgaggcggatgaactgatcacg
aaaacccaaggggatgggggcaaccggatccgctatacctatgaccccaacgggaacctg
atccaggcgaccactcagggcaaccaaagcaccacttatttctatgacagtgaaaaccgg
ctaattcagatcactgagcaccagggcaaaatccagacctttggctatgacagcgatgga
aacaggctctacaaaacggtaggcgtagagtatgaaggctatgaggccgggagctatgaa
gctgaaagcgaagaggagaagatcagttctctgatgccgcctttagccgccaattttggc
ctgttcgggctgcagaaattcattgcggcgaatgataagggcaataacggcaacggtgga
gacaaagggaacagtggcaacgatgggaacaaaggcaacggtggagacaaagggaacagt
ggcaacgatgggaataacggcaagggtggagacaaagggaacagtggcaacgatgggaat
aacggcaagggtggagacaaagggaacagtggtaatgatgggaacaagggcaacaatggc
aacaacggcaatagcggtaacaacggtaacaacggtaacaaagacaataacggaaacagc
agcaacagtggcaacagcggagacaaaagcaataacggaagcaacggcaatagtgggaac
aaaggaaacggtggcaataccaaagtccatgatgatggcagtgataaagtcaagggtggg
gacagcggaaagcatctcgggtggtataaaaccaagcaggatgctaaagaaaagccgggc
aacccaggattacacctgggctggtataaacaagcggaaaaccccaagggacctaaagat
ccgaatcacccgaataaccccaataatcccaaagatcccgatgatccgaccgatcccgat
aatcccgacaacccaaacccagataaacccttgaacaagcccgatgcctatgaggtcatt
aactatttcaacgacctctctgtggaacacactcaagtcttaatgacgacggataaagaa
ggggtgtacagaggagtttacacctatggtctcgaaagaatagcggaacgtgatctggca
gcggtggaaggggttcccaatgatcccctctattacctctatgatggacggggcagtgtg
acccagcttatcaatgatgccggacatgtgcgggataaataccgctatgacgcttacggt
atgccgatgcccggcggaaaagtgggtccgaacacccggctgttcaacaatccttacggt
tataatggtgaagcccatgaacaggagtccggcttccagtacttaagggccaggtattat
gaccctgatgtgggccgcttcatgagcagggacagctatctggggaatgtgatggagccg
ttgaccttgaaccgctatgcctatgtaagcaataatccagtgatgtatgctgatccaagt
ggtcatatgcgtgaagcaggagatagcagcggagtcatcgccatgaagcagggcaagtat
aagccccttgagtatactgtgacgccaggggataccttaggagcgatagcgcctaaacat
ggcacaacggttaatacattggttcggatgaacaacattgctgaccctaataggatctat
gttgggcagaagataaagatccctgatcctagtacagggagtcgcggggattatgtcaaa
gaaaagactgccgggaggcaggattataacaaggtggtgtgtcttgaaattcctggtcct
caggggacgggtaaagccaaaatatatgcctcattacagttgagtgaaagcgatcttgaa
ggtccacttcaaccagttatacgcgattttcaatcttgggtagatcaagctcacgaaaaa
aatctagatgatatgagtcttgccgaaagaatcgcagtaccgctatttcctagttcagaa
ttacttagtgaagttaaaataggaattatgccgtttggaatagggggtgtctttaagggc
gcgggtaaggttataagtccatcgaatgcagcaaagcaaatagtgaatgcagaacgcacc
ggcacagcattaataaaatctgatcctacccatagagcagcaagttatttaacagagaag
cagttagctgcaggaaagactttccccttacaaggtggagacggagtacagcgaacctta
ttacaaacgcctggaggattaaacggaaagtctggaatttatgaatatattcttgaacca
aatggaatggtatcccatcaaagatttattggaaagggaataataaccgggacaccaaac
caagtggttaaaccataa
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integrated database retrieval system
