Dictyostelium discoideum (cellular slime mold): DDB_G0292760
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Entry
DDB_G0292760 CDS
T00245
Symbol
lig4
Name
(RefSeq) BRCT domain-containing protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DDB_G0292760 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddi03400
]
DDB_G0292760 (lig4)
Enzymes [BR:
ddi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DDB_G0292760 (lig4)
DNA repair and recombination proteins [BR:
ddi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
DDB_G0292760 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
PTCB-BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
8628862
NCBI-ProteinID:
XP_629472
dictyBase:
DDB_G0292760
UniProt:
Q54CR9
LinkDB
All DBs
Position
6:2052081..2055347
Genome browser
AA seq
1088 aa
AA seq
DB search
MALSLYYDEDDDENENENKDKPNNDFKNQQQINTSKTTNNNNNINNKNNYNNKFNDDDIF
NNDKIITKPRVTTTTTTTKNTSTNSNINKTKFNDDDIFDDEDEDSNSNKTTTTTTTTTTT
TDTIITNDYRYQKTVPFSSFCDLMNRIINDTKISNKKNYLEKFMNHYKDEPNNFYQLLRL
ILPQLDKDRNSYGLKEKTLARLYVELLNISPESVDAMRLLNWKKSTNDEIGGDFGTAVYL
SLKNRCNNDNGRIKVSMGDINESLDQLSQPLTDKKTKVSILKKVLRSTTAQEQKWFVRII
LKEMKNGLSDNITLKFFHPDAIDHFNITSNLRLVCTNLFYMTQSKQKELKDKQKLEEKEN
LLKQQQQQQNDLDIYKLEIKLFNPIKPMLANRQSIDNLSMILNSAISATQFVVEKKFDGE
RIQIHKDGEQVKYFSRNSNDSTGIYGSMFTPIVKECVLAERCILDGELIVWDSISQRFED
FGNLKTLALNKDGISGSGDPLGINYGKQLCFIAFDILFVKDQSVMNLPLMQRLMLLKRCV
TIKSKQFEISEQTTVNSISQIISLLESAIINREEGLMLKNLHSLYVPAERKDKWVKIKPE
YIDGMGNGADDLDLVIIGGYYGSGLNRRGGTISHFMLGVPFIADSTDTDIDDESTFDKNV
IFYSFCKVGSGYTDIQLKSLQKDLDPHWNNFSTSKPPSIIQLAEPFKEKPDVWIDPRVYS
KVLQIKASQIVVTDKYKCGYTLRFPRVLKIRDDKGWKDCCSHEEIIDLFTNYSTNLNFKR
DHEYGDGSGGKNKKLKKSKKTTNQLLADSGLKVLSIFQDTDTSGIIPTQNIFQGIEICVI
KGSSGEYTKSKLEIMIVEMGGSKVQYPSRNTNYVISSKEVVKIQNLIQSGFIDIVSFNWI
VDCYNEKRLVPLGPKYMIFSTESTKKRFLLDSDQFGDSYINETTEQSLKDSFNQIDKLKL
KKQLSINSTTTTTTTSISKYFSNCWWSLFKEFTFYLDLYQVVGEKSTLIENNNLELSNLN
IQFYGGKISIEFNNKITHVVLDSLDLSRITFIKNKINSLSLPIQIVTTNWIQLSINNYSI
QPILEILD
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggctttatctctttattatgatgaagatgatgacgaaaatgaaaatgaaaacaaagat
aaaccaaataatgattttaaaaatcaacaacaaataaatacatcaaaaaccactaataat
aataataatattaataataaaaataattataataataaattcaatgatgatgatatattt
aataatgataaaattataaccaaaccaagagtaacaacaacaacaacaactaccaaaaat
acatcaaccaattcaaatataaataaaaccaaatttaatgatgatgatatatttgatgat
gaagatgaagatagtaatagtaataaaacaacaacaacaacaacaacaacaacaacaaca
acagatacaataataacaaatgattatagatatcaaaaaacagtaccattttcatcattt
tgtgatttaatgaatagaattattaatgatacaaagattagtaataaaaagaattattta
gagaaatttatgaatcattataaagatgaaccaaataatttttatcaattacttagatta
atattaccacaattggataaagatagaaatagttatggattaaaagagaaaacattggca
agattatatgttgaactattgaatatatcaccggaaagtgttgacgcaatgaggttatta
aattggaagaaatcaaccaatgatgaaattggtggtgatttcggtactgctgtttattta
tcgttaaagaatagatgtaataatgataatggtagaattaaagtctcaatgggtgatatc
aatgaatcgctagatcaactaagtcaaccattaacagataagaaaacaaaagtttcaatc
ttaaaaaaagtattacgatcaaccacagcacaagaacaaaagtggtttgtacgtatcatt
ctaaaagagatgaaaaatggactctctgataacatcactttaaaattctttcatcctgat
gcaatcgaccattttaatataacttcaaatttaagattagtatgtacaaatttattttat
atgacacaatcaaaacaaaaagaattaaaagataaacaaaaacttgaagaaaaagaaaac
cttttaaaacaacaacaacaacaacaaaatgatttagatatttataaattagaaattaaa
ttatttaatccaataaagccaatgttggcaaatagacaaagtattgataatttatcaatg
atattgaatagtgcaatttcggcaacacaatttgtggttgaaaagaaatttgatggtgaa
agaattcaaattcataaagatggtgaacaggttaaatacttttcaaggaatagtaatgat
tcaaccggtatatatggctcaatgtttacaccaattgttaaggagtgtgttttggccgag
agatgtatattggatggtgagttgattgtatgggattccatatcacaacgatttgaagat
tttggtaatttaaaaacattggcattgaataaggatggtatttcaggtagtggtgatccg
ttgggtataaattatggcaaacaactttgtttcattgcatttgatattctatttgtaaaa
gatcaaagtgtgatgaacttaccattaatgcaaagattaatgctattaaaacgttgtgta
acaataaaatcaaaacaatttgaaatctctgaacagacaactgtgaattcaatttcccaa
atcattagtttactagagagtgcgatcatcaatcgtgaagaaggtttaatgttaaagaat
ttacattccctctatgtacctgctgaaagaaaagataaatgggtgaaaattaaaccagag
tatatagatggcatgggtaatggtgccgatgatttggatttggttattattggtggctac
tatggcagtggtttgaatagaaggggtggcacaatctcccatttcatgttgggtgtacct
tttatagcagattccaccgacactgacattgatgatgaatcaacatttgataagaatgtt
atattctattcattttgtaaagttggttcaggctataccgatatacaattgaaatcccta
caaaaggatttagacccacattggaataacttcagtacaagtaaaccaccatcaataatt
caattggctgaaccattcaaagagaaacctgacgtttggattgatccaagagtttattca
aaagtacttcaaattaaggcatcccaaatcgttgtaactgataaatacaaatgtggctac
actcttagattcccaagagtattaaaaattagagatgataaaggttggaaagattgttgt
agtcatgaagaaatcattgacctctttacaaactattcaacaaatttaaattttaaaaga
gatcatgaatatggtgatggcagtggtgggaaaaataaaaaattaaagaaatcaaagaaa
actacaaaccaactattagccgatagtgggttaaaagtattatcaatatttcaagatact
gacacaagtggtattataccaactcaaaatatatttcaaggtattgaaatttgtgttatt
aaaggtagtagtggggaatacacaaaatcaaaattagaaattatgattgttgaaatgggt
ggttcaaaagttcaatatccatcaagaaacacaaattatgtaatctcttcaaaagaggtt
gtaaaaattcaaaatttaattcaatctggtttcattgatatcgtatcttttaattggatt
gtagattgttataatgaaaaaaggttagtcccattaggtcctaaatatatgattttctca
actgaatcaacaaagaaaagatttcttttagattctgaccaatttggtgattcctatata
aacgaaactactgaacaatctttaaaagattcttttaatcaaattgataaattaaaatta
aaaaaacaattatcaatcaattctactactactactaccactacttctatttcaaaatat
ttttcaaattgttggtggtcattatttaaagaatttacattttatttagatttatatcaa
gttgttggtgagaagtcaacattaattgaaaataataatttagaattatcaaatttaaat
attcaattttatggtggtaaaatttcaatagaatttaataataaaatcactcatgttgtt
ttagattctttagatttatcaagaattacttttattaaaaataaaatcaattcattatca
ttaccaattcaaattgttactacaaattggattcaactttcaattaataattattcaatt
caaccaattttagaaattttagattaa
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