Pseudodesulfovibrio mercurii: DND132_0362
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Entry
DND132_0362 CDS
T01709
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ddn
Pseudodesulfovibrio mercurii
Pathway
ddn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ddn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DND132_0362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddn03400
]
DND132_0362
Enzymes [BR:
ddn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DND132_0362
DNA repair and recombination proteins [BR:
ddn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DND132_0362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
EGB13579
UniProt:
F0JEU4
LinkDB
All DBs
Position
397073..400558
Genome browser
AA seq
1161 aa
AA seq
DB search
MPASHPKDIADFMKGTVDSVRIFKSGPGSQALLAGSLLAGGSDVVLVVPGATEFKEMQAL
LTLLSRGAPGGIERPAWEREWVFLPPYLPRNPESSGWSERWAALYGLVYRDGPRGVLMTA
DNLLPHWPDEKVLRENWVALTRGEEMSPDILLEQLVSWGYVRRKLVAEPGDMAMRGDILD
IHAPGYELPLRLEFFGDVLEEIRLFDPASQRSKADLTEAVLLPVAPCITSGDRGFRARDQ
WEKLRRTGEISAVQEQALSERLDVNDGFIWPGLYYDAPVGLETFLPGEAAWLLSSGGSLR
ARLEDREQAWRDFLKDEERDKGVSLPRRFVIRSHDVARKAWSSARQLVFEELTIGREKSG
IDLPETPYSDFTDIFWRPEASRRPWAALMAGLKEWQSAGETTILSFRTQRSRTKFLNLAE
QESLPITMEYVPDRTGLFALVSPLRKGMDIGWSRTRILGEEVLQPQAARAHERRDKAFKG
LERYDDLTEGDLLVHRDYGLSQFGGLHHMSIGEGANDYLLLYFSGEDKLYLPVDRLNLVE
RFKGPEGAKAPSLDKLGGSRWAKTTAKVRKAIEKIALELVEMYAFRRVAKGYGYGPLDEM
YAEFEATFGFEETPDQEKAVNDVFRDMEKAEPMDRLVCGDVGFGKTEVALRAAFRAALEG
RQTALLCPTTVLAEQHYQTFLKRMEGFPVRVGLLSRFVSAKRQKTVLEAASRGEIDILIG
THRILSKDVELPNLGLLILDEEQRFGVKHKEKLKHFRQNIDVLTLTATPIPRTLQLSLSG
IRGLSVIETPPVDRKPVETGIMEREELELKAVLRRELDRGGQVYWVYNRVNGLERVAEFV
RGLVPDARVGMAHGRMSEKGLEEAMRDFWHGELDVLVCTSIVESGLDFPNANTLIVDQAQ
LFGLGQLYQLRGRVGRSERQAYAYFVVPSIKDISEIVRKRLRIILDMDYLGAGFKVAMED
LRLRGAGNILGEAQSGQIAKVGLELFLEMLEEEVARLRGEEYARASDTELNFVFEAHIPG
GYIPDSRERLRYYRGLSSAATDMELREFEAEIRDRFGPLPEALDAFFGVLRIKRTLSRMQ
AARAELYPGRMVITWKDNAMAVNPERLIRWVGERGETARLIPPAKLEIRYDDAHSMREAL
ESTAADLEGMLDAETAPRDGR
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgccagccagccatcccaaggacatagccgatttcatgaaggggaccgtggattcggtc
cgcatcttcaagagcgggccgggctcccaggccctgctggcggggtccctgctggcgggc
ggctcggacgtggtcctggtggtccccggggccacagagttcaaggagatgcaggccctg
ctgaccctgctgtcgcgcggcgcgcccggcgggatcgagcggcccgcctgggagcgggag
tgggtcttcctgccgccgtacctcccgcgcaacccggaatcctcgggctggagcgagcgg
tgggccgccctgtacgggctggtctaccgggacggcccgcgcggcgtgcttatgaccgcc
gacaacctcctgccgcactggcccgacgagaaggtcctgcgcgagaactgggtcgccctg
accaggggcgaggagatgtccccggacatcctcctggaacagctggtctcctgggggtac
gtgcgccgcaaactcgtggccgagcccggcgacatggccatgcgcggcgacatcctggac
atccacgcgccgggttacgaactgcccctgcggctggagttcttcggcgacgtgctcgag
gaaatccgtctgttcgatccggcctcccagcgctccaaggcggacctgaccgaggccgtg
cttctgcccgtggccccgtgcatcacctccggcgaccgggggttccgcgccagggaccag
tgggagaagctgcgtcggaccggcgagatatccgccgtccaggagcaggccctgtccgag
cggctggacgtgaacgacgggttcatctggcccggcctgtactacgacgcgcccgtgggc
ctcgagacctttctgccgggcgaagcggcctggctgctctcctcgggcgggtcccttcgg
gctcggcttgaggatcgcgagcaggcgtggcgcgattttctgaaggacgaggagcgcgac
aagggcgtcagcctgccccgtcgcttcgtcatccgctcccacgacgtggcccgcaaggcg
tggagttccgcccgccagctggtcttcgaggagctgaccatcggccgggagaagagcggc
atcgacctgcccgagaccccgtacagcgacttcacggacatcttctggcggcccgaggcc
tcgcggcggccgtgggcggccctcatggccgggctcaaggagtggcagagcgcgggcgag
accaccatcctgagtttccgcacccagcgctcaaggaccaagttcctgaacctggccgag
caggagagcctgcccatcaccatggagtacgtgccggaccggaccggcctgttcgccctg
gtctcgcccctgcgcaagggcatggacatcggctggagccgcacgcgcatcctgggcgag
gaggtcctccagccccaggcggcacgggcgcacgagcggcgcgacaaggccttcaagggg
ctggagcgctacgacgacctgaccgagggcgacctgctggtccaccgggactacgggttg
tcccagttcggcggcctgcaccacatgtccatcggcgagggggccaacgattacctgctc
ctgtatttttcgggcgaggacaagctctacctgcccgtggaccggctcaacctggtggag
cggttcaagggccccgagggggccaaggcgccgtccctggacaagctcggcgggtcgcgc
tgggccaagaccacggccaaggtccgcaaggccatcgagaagattgccctggagctggtc
gagatgtacgccttccgccgggtggccaaggggtacggctacggcccgctggacgagatg
tacgccgagttcgaggccaccttcggcttcgaggagaccccggaccaggaaaaggccgtg
aacgacgtgttccgcgacatggagaaggccgagcccatggaccggctggtctgcggcgac
gtgggcttcggcaagaccgaggtggccctgcgcgccgccttccgcgcggccctggaaggc
cgccagaccgcgctcctgtgcccgaccacggtcctggccgagcagcattaccagaccttt
ctcaagcgcatggaggggttcccggtgcgcgtggggctgctcagccgattcgtctcggcc
aagcggcagaagaccgtgctcgaggccgccagccggggcgagatcgacatcctcatcggc
acgcaccgcatcctgtccaaggacgtggagctgcccaatctcggcctgctcatcctcgac
gaggagcagcgcttcggggtcaagcacaaggaaaagctcaagcatttccggcagaacatc
gacgtcctgaccctgacagccacgcccatcccccggaccctgcaactgtccctgtccggc
atccgggggctgtccgtcatcgagaccccgcccgtggaccgcaagcccgtggagacgggc
atcatggagcgcgaggagctggagctcaaggcggtcctgcgccgggagctggaccggggc
ggccaggtctactgggtctacaaccgggtcaacgggttggagcgggtggccgagttcgtg
cgcggcctggtcccggacgccagggtgggcatggcccacggccgcatgagcgagaagggg
ctggaggaggccatgcgcgacttctggcatggggagctggacgtgctcgtgtgcacctcc
atcgtggagtccggcctggacttccccaacgccaacacgctcatcgtggaccaggcccag
ctcttcggcctgggccagctctaccaactgcgcggcagggtggggcggagcgagcgccag
gcctatgcgtatttcgtggtcccgtccatcaaggatatttccgaaatcgtgcgcaaacgc
ttgcgcatcattctggacatggattatctgggggcaggattcaaggtggccatggaggac
ttgcgccttcgcggcgcaggcaatatcctgggcgaggcccagtccgggcagatcgccaag
gtcggcctcgaactcttcctcgagatgctcgaggaggaggtcgcccgcttgcgcggcgag
gagtacgcccgggcgtcggacacggagctcaactttgtgttcgaggcgcatattcccggc
gggtacatcccggattcacgggagcggctgcgctactaccggggtctgtcctcggccgcc
acggacatggaactgcgcgaattcgaggcggagattcgcgaccggttcggcccgctgccc
gaggcgctggacgccttcttcggggtgctgcgcatcaagcggaccctgtcgcggatgcag
gcggccagggcggaactctatcccggccggatggtcatcacctggaaggacaacgccatg
gcggtcaatcccgaacggctcatccgctgggtcggcgagcggggggagaccgcccggctc
attcccccggccaagctggaaatccgatacgacgacgcgcactccatgcgggaggcgctg
gaatccaccgccgcggacctggaaggcatgctcgatgccgaaaccgcgccgcgggacgga
cgataa
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