Dokdonia donghaensis: I597_0497
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Entry
I597_0497 CDS
T04309
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ddo
Dokdonia donghaensis
Pathway
ddo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ddo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I597_0497 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddo03400
]
I597_0497 (mfd)
Enzymes [BR:
ddo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I597_0497 (mfd)
DNA repair and recombination proteins [BR:
ddo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I597_0497 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
MADF_DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
ANH59428
UniProt:
A0A0A2GWX7
LinkDB
All DBs
Position
complement(583138..586536)
Genome browser
AA seq
1132 aa
AA seq
DB search
MSKSELSQHFAQSLPLQKLGEAIAHSQRIQAKGLTGSSLSFAVSQLFEGQERPVLLILND
KEEAAYYLNDLEALRKEENVLFYPGSYRRPYQIEETDNANILLRAEVLNRVNSRKKPALI
VTYPDALFEKVVTRKELDRQTLKVTVNDKLSLDFINEMLFEYRFKRVDFVTEPGEFSVRG
GIVDVFSFSHDRPYRIEFFGDEVDSIRTFDVESQLSLDQVKKISIMPNVENKALEETRAS
FLKYISAKTVVFIKNRSLLYDRTDQNFSKAEEAFENLSQEVKRNSPEELFCHGKNLKEQL
DSFTTIDLGSSAEVGEIEHSITFDVAPQPSFNKQFNLLIENLNDNHARGYKNIITCSSEQ
QAKRFQDIFDDADAIVSSYETIVLSLYQGFVDNDTKMVVYTDHQIFERYHKFNIKNGYAK
KQAITLKELTNLSVGDYVTHIDHGIGKFGGLKKIDVEGKMQEAIKLIYGERDILYLSIHS
LHKITKYNGKDGKPPQVYKLGSQAWKKLKAKTKSKVKHIAFNLIKLYAKRRLQKGYAFGP
DTHMQHELEASFIYEDTPDQSSVTEDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAAFKA
VDNGKQVAVLVPTTILAYQHARTFKERLKGFPVTVEYLNRFRTAKEKREVLAGLESGAVD
IVIGTHQLTSKNVVFKDLGLLVIDEEQKFGVAVKDKLKTISETVDTLTLTATPIPRTLQF
SLMAARDLSTITTPPPNRYPIESNVVRFSEEVIRYAVSYEIQRGGQVFFIHNRIENIKEV
AGLIQRLVPDAKVGVGHGQMEGKALEAKMLSFMNGEFDVLVSTTIIESGLDVPNANTIFI
NNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYSVMTEDARKRIQALEQFSVLGSGFNI
AMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKILNEAIDELKEDEFAELYKDDPAFAKEE
REYVKDTVLDTDFSLLFPDDYVNSITERLSLYTELNNVKTEEQLDAFEAKLVDRFGPLPD
EAEDLLDSVRIKWVATKIGLEKVVMKNGKLTGFFIADQQSSFYQSSTFGRVLKFVQENAY
RVSIKEKKLSKGLRLLLKSDDAKTVNDVVALLRPLMPASTQKVTAKTSGGDE
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaatcagaactctcacagcactttgcacagtctctgccactgcagaaactaggg
gaagctattgcccattctcaacgtatacaagcaaaaggtctcacgggatcttcattatct
tttgctgtaagtcagctttttgaaggccaagagcgccccgtattgttaattcttaatgat
aaggaagaagcggcttactatctcaatgatcttgaagccttgcgcaaggaagaaaacgta
ctcttttaccctggcagttacaggcgtccttaccagattgaggagacagataatgcaaat
atcttgttgcgtgcagaggtgcttaatcgtgtaaactcacgtaaaaagccagctcttatc
gtgacctatccagatgcattatttgaaaaagtagtgacacgtaaggagctagatagacaa
acgctcaaggtgactgtaaacgataagttatcgctagattttataaatgagatgctcttt
gagtatcgttttaaaagagtagattttgtaacagagccgggtgagttttcggtgcgtgga
ggtattgtagatgtattttcattttcgcacgacaggccgtaccgtatagaattttttggc
gatgaggtagatagtattagaacctttgatgttgagagtcagctgtcgttagaccaagta
aagaaaatatccataatgcctaatgtggagaacaaggcattagaagaaacaagagctagt
ttcttaaaatatatctctgcaaagacagtcgtttttattaaaaacaggtcgttgttatat
gatcgtacagatcaaaacttttctaaagccgaagaagcttttgaaaacctctcacaagag
gtaaaacgcaactcaccagaagagcttttttgtcacggcaaaaatctaaaagaacaactt
gactcttttaccactatagatttaggaagtagtgcagaggtaggtgagatagaacatagc
atcacctttgatgtggcgccacagccatcttttaataagcagtttaacctccttatagaa
aacttaaatgataaccacgctcgtggttataagaatataatcacctgtagtagtgagcag
caagcaaagcgttttcaagacatttttgatgatgcagatgctattgtatcgtcctatgag
accattgtgctatcactttatcaaggttttgtagataatgacacaaaaatggtggtgtat
acagatcaccagatctttgaacgctaccataagtttaatatcaaaaatggctatgcaaaa
aagcaagccatcacgctcaaggagcttactaacctaagtgtaggtgattatgtcacgcac
atagatcacggtataggaaaatttggcggactcaaaaagatagacgttgagggtaaaatg
caagaagccatcaagctcatttatggtgagcgtgacatcttatacctgagtatacactca
ttacataaaatcactaagtacaacggtaaggatggcaagccaccacaagtgtataaacta
ggaagccaagcctggaaaaagcttaaagccaaaacaaaatccaaggtaaaacacatcgcc
tttaaccttataaaactatatgcaaaacgccgtttgcaaaagggatatgcctttggccca
gatacccatatgcagcacgagctagaggcgagttttatctatgaagacactccagatcaa
agcagcgttacagaagatgtaaaacgcgatatggagagcgatcgccctatggatagactg
gtgtgtggtgatgtaggttttggtaaaacagaggttgccatacgtgccgcgtttaaggcg
gtagataacggtaagcaagtagcagtactggttcctaccacaatacttgcctatcaacac
gcgcgtacgtttaaagaacgtcttaaaggtttcccagtgacggtagagtatctcaaccgt
ttccgtacggccaaagaaaaaagagaagtcctcgccggcctcgagagtggcgcggtagat
attgtgataggcacgcaccagctcaccagtaaaaatgttgtttttaaagatctaggtctc
ctagtaattgacgaagagcagaagtttggcgtagccgtaaaagataaactcaagaccatc
tcagagaccgtagacacgctcacacttacagcgacacctatacctcgtaccttacaattc
tcacttatggcggctcgtgatcttagtaccatcaccacgccaccacctaaccgttaccct
atagaaagtaatgttgtgcgcttctcagaagaggtgatacgctatgcagtctcgtatgag
atacaacgtggtggccaggtgttttttattcataatcgtatagaaaatataaaggaagtc
gctggcctcatacagcgccttgtgccagatgcaaaagtaggcgtaggtcacggccagatg
gaaggtaaagccctagaggcaaaaatgctctcgtttatgaatggggagtttgatgtactg
gtctcaaccaccataattgagagtggtcttgatgtacctaatgcaaataccatttttata
aacaatgcaaataactttggactctcagacctacaccagatgcgtggtcgtgtgggacga
agtaataaaaaggccttctgttattttatcacaccgccatactctgtaatgaccgaggat
gctagaaaacgtatccaggcgctagagcagttttctgtactaggaagcggttttaatatc
gcgatgaaagatcttgagatacgtggtgcaggagatttattaggaggagaacagagcggc
tttatcaatgaaataggttttgatacctatcaaaaaatcctcaacgaggccatagatgaa
ctcaaagaagatgagtttgcagagctttataaagatgatcccgctttcgcgaaagaagaa
agagaatacgtaaaagacaccgtacttgataccgactttagtcttctcttcccagatgat
tatgtaaatagtatcacggagcgtcttagtctctacactgagctgaataatgtaaaaacc
gaagaacaactagatgcctttgaggcaaaacttgtagatcgttttggacccttaccagat
gaggccgaagacttgctggactctgtgcgcattaagtgggtagcaactaagataggccta
gagaaagtagtaatgaaaaacggcaaactcacaggcttctttatagcagaccagcagagc
tctttttaccagagttctacctttggacgtgtgcttaagtttgtacaagaaaatgcatac
cgcgtgagcatcaaagaaaagaaactgtcgaaaggacttagacttctcttaaaatctgac
gatgcaaaaactgtaaatgacgtagtcgcattattaagaccattaatgccagcgagtact
caaaaagtaaccgcaaagacctcaggaggtgatgagtaa
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