KEGG   Denitrobacterium detoxificans: AAY81_04540
Entry
AAY81_04540       CDS       T04382                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
ddt  Denitrobacterium detoxificans
Pathway
ddt03030  DNA replication
ddt03410  Base excision repair
ddt03420  Nucleotide excision repair
ddt03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ddt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AAY81_04540
   03410 Base excision repair
    AAY81_04540
   03420 Nucleotide excision repair
    AAY81_04540
   03440 Homologous recombination
    AAY81_04540
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ddt03032]
    AAY81_04540
   03400 DNA repair and recombination proteins [BR:ddt03400]
    AAY81_04540
Enzymes [BR:ddt01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     AAY81_04540
DNA replication proteins [BR:ddt03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AAY81_04540
DNA repair and recombination proteins [BR:ddt03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     AAY81_04540
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AAY81_04540
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc HHH_5 HHH_2
Other DBs
NCBI-ProteinID: ANE22510
UniProt: A0A172RXQ9
LinkDB
Position
1090469..1093123
AA seq 884 aa
MPKKIAVIDGNSLMHRAYHAVPPTMNAPDGTPTNAVFGFLSMFFKFIEVAAPDAVVCAFD
VGKPKFRIEALEQYKAQRPPMDDELRVQFPLVEEILESMNIPVVKVPGWEGDDILGTISA
RADALGYDSLLVTGDKDACQLASEHTHIVNTKKGISDVVIYDPAGVQEKYGVTPEQIPDY
LGFMGDSADNIPGVPGIGPKSASKLLQQFGSMEGVYENLDKLKGKQLENLTNNRDAAFLS
RDVAIIKRDLDFELDLDAVSFPSYTAESVSEAFDKLRLKAHLGKALALIGGQAVQHNVEI
PWRDYLTGDDAKVFADEVLDDGVAHDADDVVGIAFLKSDQGSIFGDDLMLAVSTAKACAL
LEGSQAQAMLSHAVLVSGVIPVAVYDAKAVAGEVYPADTAEEKLIHTHDLFDMKLFDVSL
AAYVLDSSARDYTPAHLAERYLGGALPQGSSDADELVIQAAAIRLLSGELSKRMEEDCVY
DVYSDIDAPLVPVLAHMERVGAAIDVDHLRALGEKTQGDLDALVAQIYELAGEEFNVDSP
KQVGHILFEVIGLKPKKKTSRGYSTDAKVLSELANEHELPGLILKYRELAKIKGTYIDAL
PKMRRGDGRLHTSFNQTVTTTGRLSSSDPNLQNIPVRTAFGRHIRECFVPLTEGHVFMSA
DYSQIELRLLAHLSGDEHLVAAFNSGADFHAATASHVFGVPIEEVTPELRSRAKAVNFGI
VYGQQAYGLSQTLKVSFAEAQQMIDQYFEAYPGVRSYLDGVVEFAREHGYAQTMFGRKRH
IPEINVRNAQQRSFAERRAMNHPMQGSAADIIKLAMVQAENRLRHEFPNAKLMIQVHDEL
DLSVPADQVEPVSELLREVMENVVELSVPLIVDVQSGENWAQAH
NT seq 2655 nt   +upstreamnt  +downstreamnt
atgcctaagaaaatagctgtcatcgacggaaactccctgatgcatcgcgcgtatcatgcg
gtgccgccaaccatgaacgcgcccgacggcactcctaccaatgccgtattcggcttcctt
tccatgttcttcaagttcattgaggttgccgcacccgacgcggttgtctgcgcgtttgac
gtgggtaagccgaagtttcgcatcgaggcgctcgagcagtacaaggcgcagcgtcctccc
atggatgacgaactgcgcgttcagttcccgctcgtcgaggaaatcttggagagcatgaac
attcccgtggtgaaggttcccggttgggaaggcgacgacatcctgggcaccatttccgcc
cgcgccgatgccctcggatacgattctctcctggttacgggcgataaggatgcgtgtcag
cttgccagtgaacatacgcacatcgtaaatacgaagaagggcatttccgatgtcgtgatc
tacgacccggcgggcgttcaggaaaagtacggcgtaaccccggagcagattcccgattat
ctggggttcatgggcgattccgccgataacatcccaggcgtacctggtattggcccgaag
agcgcctccaagcttctgcaacagtttggcagcatggagggcgtgtacgaaaacctcgac
aagctaaagggcaagcagctcgagaaccttaccaataatcgtgatgcggccttcctgtcg
cgcgatgtcgccatcatcaagcgcgacctcgacttcgagctcgatcttgatgccgtttcg
ttcccctcgtataccgccgaatccgtttcggaggcgttcgacaagctgcgcttgaaggcc
catctgggcaaggcgcttgcgcttattggcggccaggcggttcagcataacgtcgagatt
ccctggcgagattaccttacgggggacgacgccaaggtgtttgccgacgaggttctcgac
gacggcgtggcacacgacgcagacgacgttgtgggcattgccttcctcaagagcgatcag
ggttccatctttggcgacgatcttatgctggccgtttccacggcgaaggcatgcgcgctg
ttggaagggtcgcaggctcaggctatgttgtctcatgcggttttggtttcgggcgtcatt
cccgttgccgtatacgatgccaaggcagttgcgggcgaagtgtatcccgccgatactgcc
gaagagaagctcattcatacgcacgacctgttcgatatgaagctgttcgacgtgagtctt
gccgcttacgtgctcgattcctctgcgcgcgattacacgccggcgcatctagccgagcgc
tacttgggcggcgcgttgcctcagggctcttccgacgctgatgagctggtcattcaggcg
gctgccattcgcctgctttccggcgagctcagcaagcgcatggaagaagactgcgtctat
gacgtctacagcgatatcgatgctccgctcgttcccgtgcttgcgcatatggaacgcgtg
ggtgcggctatcgacgtcgatcatcttcgcgcactgggcgaaaagactcagggcgatttg
gatgcactcgttgcgcaaatctacgagctagcaggcgaggagttcaacgtcgattctccc
aagcaggtaggccatattttgttcgaggtcattggcctgaagccgaagaagaagacctcg
cgtggctattccaccgacgccaaggtgctttccgagcttgcaaacgagcatgagcttccg
ggtctcatcctgaagtaccgcgagcttgcgaagatcaagggcacgtacatcgacgcgctg
ccgaagatgcgtcgcggcgacggtcgccttcatacttcgttcaaccagacggttaccact
acgggccgtctgagctcgagcgaccccaacctgcagaacatccccgtgcgcacggcgttt
ggccgccatattcgcgaatgcttcgtgccgcttaccgagggccacgtgttcatgtctgcg
gactattcgcaaatcgagcttcgtctgcttgcgcatctttcgggcgacgagcatttggtt
gctgcattcaattccggtgccgacttccatgctgctactgcttcgcatgtattcggcgta
cccatcgaagaagtcactcccgaactgcgcagtcgcgcaaaggccgtgaacttcggcatc
gtgtatggccagcaggcatatggcctctcgcagaccctgaaggtttcctttgccgaggcc
cagcaaatgatcgaccagtacttcgaggcatatccgggcgttcgttcgtaccttgatggc
gttgtggaattcgctcgcgagcatggctatgctcagaccatgttcgggcgcaagcgccat
attcccgaaattaacgtgcgcaacgcgcagcagcgttcgtttgcggagcgcagggctatg
aaccatcccatgcagggcagtgcggccgatatcatcaagcttgccatggtccaagctgaa
aaccgcctgcgtcacgagttccccaatgcgaagctcatgattcaggtgcacgacgaactc
gacttgtccgttcctgccgatcaggtggagccggtaagcgagctgttgcgcgaagtcatg
gagaacgtggttgaactttcggtgcctctcattgtcgatgtgcagtcgggcgaaaactgg
gcgcaggctcactag

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