Demequina sp. TMPB413: LGT36_005620
Help
Entry
LGT36_005620 CDS
T08088
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dem
Demequina sp. TMPB413
Brite
KEGG Orthology (KO) [BR:
dem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LGT36_005620 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dem03400
]
LGT36_005620 (ligD)
Enzymes [BR:
dem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LGT36_005620 (ligD)
DNA repair and recombination proteins [BR:
dem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LGT36_005620 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UPU89405
LinkDB
All DBs
Position
complement(1167144..1168028)
Genome browser
AA seq
294 aa
AA seq
DB search
MTAANVRVLDGHRITITHPDKVMYPSTGMTKLDVVTYLEAIAPHLLRHASARAATRKRWV
NGVGTEDHQEDGFFHKNLDDGAPSWIHARTLKHADHSNRYPLLDSAAVLAWYAQHGTLEF
HVPQWRFGAHGKHLNPDRVVLDLDPGPGVELAACAEVAVAVRAALAQRGIESVPVTSGSK
GIHVYGSLDGSLTSDAATELVRELAYEIEGTHSDMVTATMSKSERAGKVFLDWSQNRASK
STVAPYSLRGRLRPWVACPRTWDELEASDLAQVEHHEASELVARRGDPLSVLVS
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaacgttcgcgtactcgatggacaccggattaccatcacccaccctgac
aaggtgatgtacccgtccactggcatgaccaagctagatgtggtcacttaccttgaagcg
atcgctccccacctgctgaggcatgccagcgcacgcgccgctacccgcaagcgctgggtc
aacggggttggcactgaggatcaccaggaagatggcttctttcacaagaacctcgacgac
ggcgcgccgtcgtggatccacgcgcgtaccctcaagcacgccgaccactcgaatcgttat
ccgctactcgactctgccgctgttcttgcgtggtacgcccagcacggcactcttgagttc
cacgtgccgcagtggcgctttggcgctcacggcaagcatctgaatccagaccgcgtcgtg
ctcgaccttgacccggggccaggagtcgagctcgccgcgtgtgcggaggttgccgtggcg
gtccgcgccgccttggcccaacgcggaatcgagagtgtgccggtcacgagcggttccaag
ggcatccatgtctacgggagtcttgacggctcgctcacctcggacgccgcaacggaactg
gtgcgcgaactcgcctacgagatcgagggcactcactcagacatggtcacggcgaccatg
tcgaagagcgagcgggcaggcaaggtctttctcgattggagccagaaccgggcctccaag
agcacggtcgctccgtactccttgcgaggacggctccgcccatgggtggcgtgcccgcgt
acttgggacgaactggaagcctcagacctcgctcaggtcgagcatcatgaggccagcgaa
ctcgtggctcgccgcggagacccgctctctgtccttgtctcgtag
DBGET
integrated database retrieval system
