Demequina sp. TMPB413: LGT36_008780
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Entry
LGT36_008780 CDS
T08088
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dem
Demequina sp. TMPB413
Pathway
dem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LGT36_008780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dem03400
]
LGT36_008780 (mfd)
Enzymes [BR:
dem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LGT36_008780 (mfd)
DNA repair and recombination proteins [BR:
dem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LGT36_008780 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UPU87367
LinkDB
All DBs
Position
complement(1812441..1815977)
Genome browser
AA seq
1178 aa
AA seq
DB search
MPWRPPLSRPLAPLVASVGAPRIADGDHLVAPPSASPALIASAVDPQSLLVVLTATGNDA
EALESALGAYLDPHEVALFPNWETLPHERLSPRADTVARRLATLRRIAHPEQAAVETGLP
APRIVVAPLRAALQPLAPGLADLEPVRLTRGERVDLTDVVERLARAAYARVDMVERRGEF
AVRGGIVDVFAPTDPHPVRIEFFGDEVESIRQFSVADQRSLAEVERLWAPPCREVLLTEE
VQRRASAVQSMLPAAADLLGRLAAGQVVEGMESLLPVLVDHLETLPALLPRGTRIVALEP
ERLARRAEDLHSTAEEFLAAAWVSATAGADAPLELAAVADSASDSPLAKGGFLTMDELHE
AMESAGIGWATIGPFGGDDASETGFVALESFRGRAGAALELARTRLAEGWRIVIAAAGTG
SAQRIAEQCRDADLPSRVSDDTAEVSPGVIDIVAGVNGGGFQVPEQRLLVLHESDLTGRA
TAVAGPKVKVPSKRRNVVDPLQLRPGDFVVHESHGVGRFVELTKRTVRGVEREYLVIEYA
PSKKGQAGDRLSVPTDQLDLITKYVGGEAPTVNKMGGADWAKTKGRARKAVKEIAAELIR
LYSARMATKGREFGQDTPWQRELEEAFAFVETPDQLSTIDDVKADMEKPVPMDRLVCGDV
GFGKTEIAVRAAFKAIQDGTQVALLCPTTLLVKQHVDTFAERFAPFPVKVAALSRFQSDK
EAKAVVEGLSDGTIDMVIGTHRLITGSVRFKHLGLVIIDEEQRFGVEHKETLKALRTDVD
VLSMSATPIPRTLELAVTGIREMSTLATPPEERHPILTYVGPQEQAQVAAAIRRELLRDG
QVFYIHNSVKTITRAAVQLAELVPEARIAVAHGQMSEKQLEQVIVDYYDRQYDVLVCTTI
VETGLDISNANTLIVERADTFGLSQLHQLRGRVGRGRDRAYAYFLYPAERTLTETAHDRL
ETIAANTDLGSGMAVALKDLEIRGAGNLLGGEQSGHIEGVGFDLYIRMVGEAVAGFRGEG
EEERAPVTIDLPIDAHIPTEYIEHERLRLEAYRTIADAGDDAALAAAADALDDRYGPIPE
PVSNLFAVARARLELRQLGVTDVVAQGKYVRIAPIELPDSAAMRMTRIYPGTLIKPAVRS
VLVPAPTTARIGGSPVEGLAVLDWVRDVLKTALPSPIG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgccctggaggcccccgttgtcacgtccgctcgcgccgcttgtcgcttccgtcggggca
ccccgcatcgcagacggcgaccacctggtggctccgccgtcggcgtcgcctgccctgatc
gcgtcggccgttgaccctcagagcctcctcgtcgtcttgaccgccacgggcaacgacgcc
gaagccctcgaatccgcccttggcgcgtatctcgaccctcacgaggtcgccctgtttccc
aactgggagacgctcccgcacgagcggctcagcccccgcgcggacacggtcgcgcgcagg
ttggccaccttgcgccgcatcgcgcaccctgaacaggctgccgtggagactggattgccg
gctcctcgcatcgtcgtggcgcccttgcgcgcggcgttgcagcccctggctccgggcctc
gcggaccttgaacccgtccggttgacgcgaggcgagcgtgtcgacctcaccgacgtggtg
gaaaggctggcgcgggccgcctacgcgcgcgtcgacatggtcgagcgccgcggtgagttc
gcggtacgcggcggcatcgtcgacgtgttcgctccgacggaccctcaccctgtgcgcatc
gagttctttggcgatgaggtggagtcgatcaggcagttctcggtggccgaccagcgttcc
ctcgcggaggtcgaacggctctgggcgcctccgtgcagggaagtgttgcttactgaagag
gtgcaacgccgcgcctccgccgtgcagtcgatgcttcctgcggcggctgacctgttgggg
cgcctcgctgcagggcaagttgtcgagggaatggagtcgctcctgccggtgctggtcgac
cacctcgaaacgctgccagcgctgctgccgcgaggcacgcgcatcgtcgcgcttgagccg
gagcggctggcgcgccgcgctgaagacctccacagcacggcggaggagttcctcgccgcg
gcgtgggtgagtgccacggctggcgccgacgcaccccttgagttggccgccgttgccgac
tcggccagcgatagcccgctcgccaagggcggcttcctcacgatggatgaactgcacgag
gcgatggagtcggccggaatcggctgggcgaccatcggcccgttcggtggtgacgacgcg
agcgagacgggctttgtcgcgctcgagtctttccgtggcagggccggcgccgctcttgag
ttggcgcgaacgcgcctggcggaggggtggcgcatcgtgattgctgccgccggcaccggc
tcggcgcagcgcatcgcggagcagtgccgcgacgcggacctgccctcacgcgtcagcgac
gacactgcggaggtgtcgccaggggtaatcgacatcgtcgccggagtcaacggcggaggc
ttccaagtcccggagcagcgactgctggtgctccacgagtccgatctgacgggccgcgcc
accgccgtcgccgggccaaaggtgaaggtgccatcgaagcgccgcaacgtcgtcgacccc
ctgcagctacgccctggcgactttgtggtccacgaaagccacggcgtcggccgttttgtg
gaactgaccaagcgcaccgtccgcggcgtcgaacgtgagtacttggtgatcgaatatgcg
ccttccaagaaggggcaggcgggggaccggctgagcgtccccactgaccaactcgatctc
atcaccaagtacgtgggtggcgaggctccgacagtcaacaagatgggcggcgccgactgg
gcgaagaccaaggggcgcgcccgcaaggccgttaaggagatcgcggctgagctcatcagg
ttgtactccgcgcgcatggcgaccaagggccgcgagttcggccaggacactccgtggcag
cgggagctcgaggaagccttcgcgttcgtcgagacgcccgaccagctgagcacgatcgac
gacgtcaaggccgacatggagaagccggtgcccatggacaggctggtgtgtggcgacgtg
ggctttggcaagaccgagattgcggtgcgggccgcgttcaaggccatccaggacggcacg
caggtggcactgctgtgccccaccacactgctggtcaagcaacacgtcgacaccttcgcc
gaacgcttcgctcccttccccgtgaaagtcgccgcactcagccgcttccaaagcgataag
gaggccaaggccgtcgtcgaaggcctatcggacgggacgatcgacatggtgatcggcacg
cacaggctcatcaccggctccgtgcgtttcaagcaccttggcctcgtgattatcgacgag
gagcagcgctttggagtcgagcacaaggagaccttgaaggcgttgcgcaccgacgtggac
gtcctgtcgatgtcggccacgcccatcccgcgcactctcgaactcgcggtcacgggcatc
cgcgaaatgtcgacgctcgcgacgccgccagaggaacgccacccgatcctcacctacgtt
ggccctcaagaacaggcccaggtggccgccgctattcgccgcgaactgttgcgcgacggg
caggtgttctacattcacaactccgtcaagaccatcactcgcgcggccgtgcaactggcc
gaactcgtgcctgaggcccgcatcgccgtggcgcatggccagatgagcgagaagcaactc
gaacaggtaatcgtcgactactacgacaggcaatacgacgtgctggtgtgtaccacgatc
gtcgagaccggtctcgacatctccaacgccaacacgctcatcgtggaacgcgccgacacc
ttcgggctgtcgcaactgcaccagttgcgcgggcgcgttggccgcggccgcgatcgcgcg
tacgcctacttcctgtacccggccgagcgcaccctcaccgagaccgcccacgaccgcctc
gagaccatcgcggccaacactgacctcggctccggtatggccgtcgcgctcaaggatctg
gagatccgcggcgcaggaaacctgctgggtggcgagcagtctggacacatcgagggagtg
ggcttcgatctctacatccgcatggtgggcgaggccgtcgctggcttcaggggagaggga
gaagaagagcgcgcgcccgtcacgatcgacctgcccatcgacgcgcacatccccaccgaa
tacatcgagcacgagcgcttgcgcttggaggcctatcggaccatcgccgacgcgggggac
gacgccgctcttgcggcggccgccgacgccctcgacgaccgctacggaccaatccccgag
cccgtctcaaacctctttgcggtcgcgcgggcgcggttggagttgcgtcaactcggcgtg
acagacgtggtcgcccaaggcaagtacgtccgcatcgctcctatcgagttgcccgactcg
gcggccatgcggatgaccaggatctacccaggcacgctcatcaagccagcggtgcgcagc
gtcctggttcctgcccccacgactgctcgcatcggcggctctcctgtggagggtctggcg
gtgctcgactgggtgcgggacgtgctcaagaccgccttgccctccccgataggatga
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