Devosia sp. H5989: XM25_06135
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Entry
XM25_06135 CDS
T04003
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
deq
Devosia sp. H5989
Pathway
deq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
deq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XM25_06135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
deq03400
]
XM25_06135
Enzymes [BR:
deq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XM25_06135
DNA repair and recombination proteins [BR:
deq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XM25_06135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
SecA_DEAD
RecG_dom3_C
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AKR55393
LinkDB
All DBs
Position
1288482..1291979
Genome browser
AA seq
1165 aa
AA seq
DB search
MSQVPVRTISNVPDGMQAVVLARLVEERLKADPEAAAAAVFVARDGRRLQRMAETLAQLL
PGHAILTVPAWDCLPYDRVSPNTVTIAERMKTLAALTDGSARGAVVLTAVNALVQRLIPR
EVTAGMSFSAAAGKVVASDKLIAWAANNGYLRVPTVREAGEYAVRGGIVDLFPAGQETPL
RFDFFGSQLETIRTFDPDSQRTTGNIKTISLAPMSEAVLAEDTIRRFRRNYTATFGGNTA
DDPLYAAVSAGQRFPGVEHWLPFFYEDMSRLADYTGDAPFVFDDQAKEAFAERQQQIADY
YDARQEARQAPAGATSGAPYKPIEPGLLYEMEAPAYAQAGTTVVQLSPFSAPGGSKRDDA
GGRLAHNFAAERQAADTNLFEAVVDLLKKNSRAGRRTIIACWSTGTRDRMAQVLHDHGLQ
NPRMAENWRDAETTSANTTALVVLGLDTGFETDDLLVLSEQDILGERILRPQRRKKASDA
LTEAASLAAGDLVVHVDHGIGRFVGLKVIEAGGAPHECVEIEYAKGDKLYLPVENIELLS
RYGSEETGAELDRLGGVAWQAKKGRLKKRIREMAEQLIKIAAARQLTRSDPIALPTGAYE
DFAARFPYEETEDQLVAIEAVLDDLTSGRVMDRLVCGDVGFGKTEVALRAAFAVAMSGKQ
VAVVVPTTLLARQHLRTFKERFAGLPVNVAGASRLIPSAELKATKEGLESGHVDIVVGTH
ALLSKSIKFKDLGLLIIDEEQHFGVGHKERLKELKANVHVLTLTATPIPRTLQLALTGVR
DLSLLATPPVDRLAVRTFVSPFDPLSIREALLREKYRGGQAFYVVPRIKDQPDIAEFLTQ
QVPEVSFVVANGQMAPGELDDIMNAFYDGKFDVLVATTIVESGLDIPNANTLVVHRADNF
GLAQLYQIRGRIGRSKARAYALFTIPPDRKLTDTAERRLGVLQSLESLGAGFQLASHDLD
IRGAGNLLGEEQSGHIREVGYELYQSMLEEAVASLRAGEEVYEEKGEWSPQISIGMPVMI
PEYYVPDLQLRMQLYRRLGDLTDAREIDAAGAELIDRFGPLPEEVEALLKIILVKSLCRA
ANVEKVDAGPKGAIITFRNSEFADPVGLVKLVADPGQQARVRPDQKIVFARNWPSADARL
KGTAAILSRLAKLAEAGRASVTVSG
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgagccaggttccggtccgcaccatctccaatgtccccgacggcatgcaggcggttgtc
ctggcgcgcctggtcgaggaacgcctcaaggccgaccccgaggccgctgccgcggcagtg
ttcgtggcgcgcgacgggcggcgcctgcagcgcatggccgagacactggcgcaattgctg
cccggccacgcgatcctcaccgtccccgcctgggactgcctgccctatgaccgcgtctcg
cccaacacggtgacgatcgccgagcgcatgaagacgctggcggcgctgacagatggctcg
gccaggggcgcagtggtgctgacggccgtcaacgcgctcgtccagcggctcatcccgcgc
gaggtgacggcaggcatgtccttctcggccgcggccggcaaggtcgtggccagcgacaag
ctcatcgcctgggcggccaataacggctacctgcgcgtgcccacggtgcgcgaagccggc
gaatacgccgtgcgcggcggcatcgtcgatctctttccggccggccaggaaaccccgctg
cgattcgatttcttcggctcccagctcgaaaccatccgcaccttcgaccccgacagccag
cgcacgaccggcaacatcaagacgatctcgctggcgccgatgagcgaggcggtgctcgcc
gaggacaccatccggcgcttcaggcgcaattacacggcgaccttcggcggcaataccgcc
gacgatccgctctacgctgccgtcagcgccggacagcgcttcccgggcgtcgagcactgg
ctgccgttcttctatgaggacatgagccggctggccgactacacgggcgacgccccgttc
gtcttcgacgaccaggccaaggaagccttcgccgaacgccagcagcagatcgccgattac
tacgatgcccgccaggaagcgcgccaggcccccgccggcgccacctcgggcgcaccctat
aagcccatcgagccgggcctgctctacgagatggaggcgccggcctatgcgcaggcgggc
accaccgtcgtccagctctccccgttctcggccccgggcggcagcaagcgggacgacgcc
ggcggacgcctggcccacaatttcgccgccgagcggcaggccgccgacaccaatctcttc
gaggcggtcgtcgaccttctcaagaagaacagccgggcagggcgccgcaccatcatcgcc
tgctggtcgactggcacgcgcgaccgcatggcccaggtgctgcacgaccacgggctccag
aacccgcgcatggccgaaaactggcgcgacgcggaaaccacctcggccaataccaccgcg
ctggtggtgctgggcctcgacaccggcttcgagacagacgacctgctggtgctttccgag
caggatatcctgggcgagcgcatcctgcgcccgcagcgccgcaagaaggccagcgacgcg
ctgaccgaggcggcaagcctggcggccggggacctggtagtccatgtggatcacggcatc
ggccggttcgtgggcctcaaggtcatcgaggcgggcggggcgccccacgagtgcgtggag
atcgaatacgccaagggcgacaagctctacctgccggtcgagaacatcgaactgctctcg
cgctacggctcggaagagaccggggcggagctcgaccggctgggcggcgtcgcctggcag
gccaagaagggccggctcaagaagcgcatccgcgagatggccgagcagctcatcaagatc
gcggcggcgcgccagcttacaagatccgacccgattgcgctccccaccggcgcctacgag
gattttgccgcgcgcttcccctacgaggagaccgaggaccagctcgtggccatcgaggcc
gtgctggacgacctgacctccggacgcgtcatggaccggctggtctgcggcgacgtcggc
ttcggcaagaccgaagtggcgcttcgcgccgcattcgccgtggccatgtcgggcaagcag
gtcgccgtggtcgtgccgacgacgctgctggcgcgccagcacctgcgcaccttcaaggag
cgcttcgccggcctgccggtgaacgtcgccggcgcctcgcgcctgatcccctccgccgaa
ctcaaggcgaccaaggaggggctcgagagcgggcacgtcgatatcgtcgtcggcacgcac
gcgctgctctccaaatccatcaagttcaaggacctgggactgctcatcatcgacgaggag
cagcatttcggcgtgggccacaaggaacgcctcaaggagctcaaggccaacgtgcatgtg
ctgacgctgacggcaacgccgatcccgcgcacgctgcagcttgccctcaccggcgtgcgg
gatctctcgctgctggcgacgccaccggtggatcgcctggcggtgcgcaccttcgtctcg
cccttcgatccgctctcgatccgcgaagcgctcctgcgcgaaaagtatcgtggcggacag
gccttctatgtagtgccccgcatcaaggatcagcccgacatcgccgagttcctgacccag
caggtgcccgaagtctctttcgtggtcgccaacggccagatggcgccgggcgagctcgac
gacatcatgaacgccttctacgacggcaagttcgacgtgctggtggcaacgaccatcgtc
gaatcggggctggatatccccaatgccaatacgctcgtcgtgcatcgcgccgacaatttc
ggcctggcccagctctaccagatccgcgggcgtatcggccgctccaaggcgcgcgcctac
gcgctcttcaccatcccgcccgaccgcaagctgaccgatacggccgagcgccggctgggc
gtgctgcagtcgctcgaaagcctgggggccggcttccagctcgccagccacgacctcgat
atccgcggcgcgggcaacttgctgggcgaggagcagtcgggccatatccgcgaggtcggc
tacgagctctaccagtccatgctagaagaggccgtggcctccctgcgcgcgggcgaagag
gtctacgaggaaaagggcgagtggagcccgcagatctccatcggcatgccggtgatgatc
cccgagtattacgtgccggacctgcagctgcgcatgcagctctaccggcgcctgggcgac
ctcaccgatgcacgcgagatcgacgcggccggcgccgagctcatcgaccgcttcgggccg
ctgcccgaggaagtcgaagcgctgctcaagatcatcctggtcaagtcgctctgccgcgcc
gccaacgtcgagaaggtcgatgccggccccaagggcgcgatcatcacgttccgcaacagc
gagttcgccgacccggtgggactggtcaagctcgtcgccgatccgggccagcaggctcgc
gtgcgccccgatcagaaaattgtgttcgcacgcaactggccgtccgccgacgcacgcctg
aagggaactgcggccattctgtcccggctggccaagcttgccgaggcgggccgtgcttcc
gtcacagtttccggataa
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