Dermacoccus sp. PAMC28757: H7F30_06850
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Entry
H7F30_06850 CDS
T08446
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
derm
Dermacoccus sp. PAMC28757
Pathway
derm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
derm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H7F30_06850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
derm03400
]
H7F30_06850 (mfd)
Enzymes [BR:
derm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H7F30_06850 (mfd)
DNA repair and recombination proteins [BR:
derm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H7F30_06850 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QNK53974
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Position
1411472..1415098
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AA seq
1208 aa
AA seq
DB search
MPEATNLPLMPLLERVCADASVGRLLALRGEEGLVDVAAASGLRGPIAAALAGACAPGEG
GVPLLVVTATGREADDVTAVLRSFLDYDAVADFPSWETLPHERMSPRSDTVGKRLAVLRR
LAHPESGGTYGPIEVVVASVRALMQPLAKGLGDLEPVSLAAGDERPLEDIVQALVGAAYT
RVDMVEKRGEFAVRGGILDVFPPTEDHPVRLEFWGDVVEEIRWFKVADQRSLEVNPHGLW
APPCRELLLTPEVRERAAELAPTLPGVTDMLSKVAEGIAVEGMESLMPALLPAGMETLVD
VVRPGTHVVLLDPERVRTRAHDLVNTSQEFLDASWANAAAGNAIPVDLRSILDGGSYWAL
SDLRDKALAGERAWWSFSSFAADNDLQEFLEDELPGTRVTIASEDVPNYRGDTEKASADI
KAHVDAGRSVAVVTDGPGFAKRVTQVLGEHDVASRPMTQVQAGVEVATGALGHGFEMPDL
GLVVLTEADLTGSAGASTKDMRRMPSRRRNVVDPLQLKPGDHVVHEQHGVGRFVEMMQRT
VGGATREYLVLEYASSKRGQPGDRLFVPTDQLDQVTRYVGGEMPTLSKMGGSDWAATKSK
ARRHVKQIAGELIRLYSARQATPGHAFAPDTPWQRELEDAFAYVETPDQLSSIDEVKADM
EKTVPMDRLVCGDVGYGKTEIAVRAAFKAIQDSKQVAVLVPTTLLVKQHFSTFSERYAGF
PVTVRALSRFQSDKEAREVLAGLKDGSIDLVIGTHRLLSKEVQFKNLGLVIVDEEQRFGV
EHKEQLKQLRTAVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGAYDEK
QITAAIRRELMREGQVFYVHNKVGSIEKQAARIRELVPEARVATAHGKMGEARLEEVVVD
FWERKFDVLICTTIVETGLDISNANTLIVERADQLGLSQLHQLRGRVGRGRERAYAYFMF
PAEKPLTETAHDRLQTIASHTDLGAGMQIAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYV
RMVGEAVADYRGDEGNAMPVEIKIELPVDAHLPHEYVPGERLRLEAYKKLASVEDEAALD
EIIAELKDRYGEPPQPVLNLFDVARLRTVARKAGISDIGVQGKYVRFGPVTELRESQELR
LERLFPGTLVKSAQERLLVPTPMTKPVGGKPLRDEAILQWATQLVQAVLLDDIAAAAAAQ
ELSRGGRR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaggccaccaatctgccgctcatgccgctgctcgagcgggtgtgcgcggacgcc
tcggtcggcaggctgctcgcgttgcgcggcgaggagggcctcgtcgatgtcgcggccgcc
tccggcctgcgcggaccgatcgcggcggcgctcgccggcgcctgcgcgcccggtgagggt
ggcgttccgttgctcgtcgtcacggccaccggtcgtgaggccgacgacgtcacggccgtc
ctgcgcagcttcctcgactacgacgccgttgccgacttcccgagctgggagacgctcccg
cacgagcggatgtcgccgcgctccgacacggtcggcaagcgcctggcggtgctgcggcgc
ctcgcgcaccccgaatccggcggcacctacgggccgatcgaggtcgtcgtcgcctccgtg
cgggcgctcatgcagccgctcgccaaggggctcggtgatctcgaaccggtcagcctcgcg
gccggcgacgagcgcccgctcgaagacatcgtccaagccctcgtcggtgctgcgtacacg
cgcgtcgacatggtggagaagcgcggtgagttcgccgtgcgcggtggcatcctcgacgtc
ttcccgcccaccgaggaccacccggtgcgcctcgagttctggggcgacgtcgtcgaggag
atccgctggttcaaggtggccgaccagcgttcgctcgaggtcaacccgcacgggctgtgg
gcgccgccgtgccgtgagctgctgctgacgcccgaggtccgtgagcgcgccgccgagctc
gccccgacactgcccggcgtcaccgacatgctctccaaggtggccgaaggcatcgccgtc
gagggcatggaatccctcatgccggcacttcttcccgcggggatggagacgctcgtcgac
gtcgtgcgcccgggaacccacgtcgtcctgctcgacccggagcgtgtgcgcacccgcgcc
cacgacctcgtcaacacctcccaggagttcctcgacgcaagttgggccaacgcggctgct
ggcaacgccattccggtcgacctgcgctcgatcctcgacggcggttcctactgggcgctg
tcggatctgcgcgacaaggcgctcgccggcgagcgcgcgtggtggtcgttcagctccttc
gctgccgacaacgacctgcaggagttccttgaggacgagttgcccggcacccgcgtcacc
atcgcgtcggaggacgtgcccaactaccgcggtgacacggagaaggcctcggccgacatc
aaagcccacgtcgacgccgggcgatccgtcgccgtcgtcacggacgggcccggcttcgcc
aagcgcgtaacgcaggtgctcggcgagcacgatgtggcctcgcgcccgatgacgcaggtg
caggccggcgtcgaggtggccaccggcgcgctcgggcacggcttcgagatgcccgacctc
ggtctcgtcgtcctcaccgaggccgacctcaccggttcggccggggcgagcacgaaagac
atgcgacgcatgccgtcgcgccgccgcaacgtcgtcgacccgctgcagctcaagccgggc
gaccacgtcgtccacgaacagcacggtgtcggccgcttcgtcgagatgatgcagcgcacc
gtcggcggagccacccgtgagtacctcgtgcttgagtacgcctcgagcaagcgggggcag
ccgggcgaccgactcttcgtccccaccgatcagctcgaccaggtcacccggtacgtcggc
ggcgagatgcccaccctgtcgaagatgggtggttccgactgggccgccacgaagtcgaag
gcgcgccgtcacgtcaagcagatcgcgggtgaactgatccgcctctactccgcgcgccag
gccacgcccggtcacgcgttcgcaccggacaccccatggcagcgtgagttggaggacgca
ttcgcctacgtcgagacgccggatcagctgagcagtatcgacgaggtcaaggccgacatg
gagaagacggttccgatggaccgcctcgtctgcggtgacgtcggctacggcaagaccgag
atcgccgtgcgcgccgcgttcaaggcgattcaggattccaagcaggtcgccgttctcgtg
ccgaccacgctgctcgtcaagcagcacttctccaccttctccgagcggtacgcgggcttc
cccgtcacggtgcgtgcgctctcgcgcttccagagcgacaaggaggcccgcgaggtgctc
gcgggcctgaaggacggctcgatcgatctcgtcatcggtactcaccgcctgctgagcaag
gaggtccagttcaaaaatctcggcctcgtcatcgtcgacgaagaacagcgattcggtgtg
gagcacaaggagcagctcaagcagctgcgtacggccgtcgacgtgctcgcgatgtcggcc
acgccgattccgcgcacgctcgagatggcggtcaccggcatccgcgagatgtcgaccctg
gccacgccgccggaggagcgccaccctgtcctcaccttcgtcggtgcgtacgacgagaag
cagatcacggccgccatccggcgcgagctgatgcgtgagggtcaggtcttctacgtccac
aacaaggtcggcagcatcgagaagcaggctgctcgcattcgcgaactcgtgcctgaggcg
cgtgtcgccacggcccacggaaagatgggcgaggcccgtctcgaggaggtcgtcgtcgac
ttctgggagcgcaagttcgacgtgctcatctgtacgacgatcgtcgagaccggcctcgac
atcagcaacgccaacacgctcatcgtcgagcgggccgaccagctcggcctgagccagctg
caccagctgcgtggacgtgtcggccgtggccgcgaacgtgcctacgcgtacttcatgttc
cccgcggagaagccgctcacggagacggcgcacgaccgactccagacgatcgcgagccac
acggacctcggggcgggcatgcagatcgcgatgaaggacctcgagatccgcggcgccgga
aacctcctcggcggcgaacagtccggtcacatcgccggcgtcgggttcgacctctacgtg
cgcatggtgggcgaggccgtggccgactaccgcggcgacgagggcaacgcgatgccggtc
gagatcaagatcgaactgcccgtcgacgcgcacctgccgcacgagtacgtgccgggggag
cgtctgcggctcgaggcgtacaagaagctcgcgagcgtcgaggacgaggcagctctcgac
gagatcatcgccgagctcaaggacaggtacggcgagccgccgcagccggtgctcaacctc
ttcgacgtggcacgtctgcgcaccgtcgcgcgcaaggcgggcatcagcgatatcggtgtg
cagggcaagtacgtgcgcttcgggccggtcaccgagctgcgcgaatcgcaggagctgcgc
ctcgagcggctcttcccgggcaccctcgtcaagagtgcacaggagcgcctgctcgtgccc
acgcccatgacgaagcccgtcggcggcaagccgctgcgtgacgaggcgatcctgcagtgg
gccacgcagctcgttcaggcggtgctgctcgacgacatcgcggccgccgctgcggcgcag
gaactgtcccgaggaggacgccgatga
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