Desulfomicrobium sp. ZS1: NLA06_05275
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Entry
NLA06_05275 CDS
T08898
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
desu
Desulfomicrobium sp. ZS1
Pathway
desu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
desu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NLA06_05275 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
desu03400
]
NLA06_05275 (mfd)
Enzymes [BR:
desu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NLA06_05275 (mfd)
DNA repair and recombination proteins [BR:
desu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NLA06_05275 (mfd)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_16
DUF1611_N
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UTF51302
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All DBs
Position
1156534..1159974
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AA seq
1146 aa
AA seq
DB search
MIIPQALQKFIDGSERQTRIFKSGPASQMFLAQALIEKGHNVVLVLPPSADLPLYDSLAR
LFSPADRNLSFWERRWLRFPHYSVEDPRRSPWPERWRILFALAQKKRGRGVLLPLENLIQ
KWPHPELLQREHLNLSEGEEISQEDLLETLVNWGYARVSMVTAVGETSLRGDIMDIFCPG
YDHPLRLEFFGDTLERIRLFEPMSQRSRAELKSLTILPVAGCIGADTYKEEARSMFDGWL
RLGEISKPARAALEKELLQVHPHLPPSMYYPRTVGLDAWLPEGSVFIMAEAQDLRTKLDE
TSWAWQNYFRDDERQWPRHGLIQTPGDVRKTWEDSRQILCESLVMGVREEGLDLPEEGVS
SFEELFWTPESRSRPWRALMQELAVWRRTYAQTIFCFHTEQSRKKFLQLAAQDDHVLKTE
YDAQGKGIFALVGSLGHGMRLPWAEIQILPESVLQPGAPKAQRSAGKAFKGLDAFDELES
GDLLVHRDYGLCRFGGLHRIKFGDVANDYLLLQYDGEDRLYLPVDRLGQVQRYKGPDGAA
PALDRLGSAAWSKARERTRQSIAKIARDLVEMYAFRKIAKGFQYNPISELYWEFEASFGF
EETRDQEKAIADVLADMEKPEPMDRLVCGDVGFGKTEVALRAAFRAVLDGKQVALLCPTT
VLAEQHFQTFRQRMEPFSITVGLLSRFVPAAGQKRTLEAARRGQVDVLIGTHRMLSKDVE
FANLALLILDEEQRFGVKHKERIKKMRSTIDVLTLTATPIPRTLQLSLSGIRGLSVIETP
PRDRKPVETSLLERDPAQLKAILERELARGGQVFWVYNRVQGLERVVEFVSSLVPGARVG
MGHGQMKAHDLEETMHKFWHGELDVLVCTAIIESGLDFPRANTLIVDQAQLFGLGQLYQL
RGRVGRSSEQAYAYFIIPDLDRLQETSRKRLKIILDMDYLGAGFKVAMEDLRLRGAGNIL
GEAQSGTIGKVGLDLFLEMLEEEVTRLRGGKVETEIEPELNLGFQALIPEEYVADGKERL
HYYKALSSCHDEGAIVEIVDDMRDRFGSLPEALKTFVAVLMIKIDARRLGAVRVDLFEDR
ALIHWDETRHNVDLSKLMGWVGENAACARILPPAKLELRLPAAASPTHAMHALKDQLLVL
RERIKL
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
gtgatcatcccccaagccttgcagaagttcatcgacggatcagagcgtcaaaccagaatc
ttcaaaagcggtcccgcttcgcagatgtttctggcccaggcgttgattgaaaagggccac
aatgtcgtgctggtgctgccgccgagcgcggatctgcccctgtacgattccctggcgcgt
ctcttttcgcctgcggacagaaacctttctttttgggagcggcgctggctgcgttttccc
cattattcagtggaggacccacgccgttctccctggccggaacgttggcggatccttttt
gccctggcgcagaaaaagcggggacgcggcgtgctcctgccgcttgaaaatctgatccag
aaatggccgcaccccgagttgctgcagcgggagcatctgaatctgtcggaaggcgaggag
atttcccaggaggatctcctggagactctggtcaactgggggtatgcacgcgtttccatg
gtcaccgccgtgggtgagacgtccctgcgcggcgacatcatggatattttctgtcccggc
tacgaccatccgctgcgactggaatttttcggcgacaccctggagcgcatccggcttttt
gaacccatgtcccagcggtcccgcgctgaactcaaatccctgacaattctgcccgtggcc
ggatgcataggcgccgatacctataaggaagaagcccggagcatgttcgacggatggttg
cggctgggtgagatttcaaagcctgcgcgcgcggcgcttgaaaaggagctgctgcaggtc
catccgcatctgccgccgagcatgtactaccctcggaccgtcggcctggatgcctggctt
cccgaagggagcgtcttcatcatggccgaggcccaggatttgcggaccaagctcgacgag
acaagctgggcctggcagaattattttcgcgacgacgagcggcagtggcctcggcacggc
ctgatccagaccccgggcgacgtgcgcaagacctgggaggacagtcggcagattctctgc
gagagtctggttatgggggtacgcgaagaagggttggacttgcccgaagagggggtaagt
tcgttcgaggaacttttctggaccccggaaagccgctcccggccatggcgggcgctgatg
caggaacttgccgtctggcgcagaacctacgcccagaccattttctgttttcataccgag
cagtcccgtaaaaaatttctgcagctcgcggcccaggacgaccatgtgctcaaaaccgag
tacgacgcccaaggcaagggaatcttcgccctggtcgggtctttgggacatggcatgcgc
ctgccttgggccgaaatccagattttgcccgagtccgtgctccagccgggggctcccaag
gcgcagcgcagcgcgggcaaggcattcaagggcctcgatgcctttgacgagctggaaagc
ggggacctgctggttcatcgcgattatggcctgtgccgctttggcggtttgcatcgcatc
aagttcggggatgtcgccaacgattacctgttgctgcagtacgacggtgaggaccggctc
tatctgccggtggaccgcctggggcaggtgcagcgttacaaggggcccgacggcgcggcc
ccggctctggaccgtctgggcagcgcggcctggagcaaggcccgcgagcgcactcgccag
tccatcgccaagatcgcgcgcgacctggtcgagatgtacgccttccgcaagatcgccaag
ggttttcagtacaatcccatctccgagctgtactgggaattcgaggccagtttcggcttt
gaggagacgcgcgatcaggaaaaggccattgccgatgttctggccgacatggaaaagccc
gagcccatggaccggctggtctgcggcgacgtgggcttcggcaagaccgaggtggccctg
cgcgcggctttcagggcggtcctggacggcaagcaggtggccctcttgtgcccgaccacc
gttctggccgaacagcatttccagaccttccggcagcgcatggagccgttctccatcacc
gtggggctcctgagccgctttgtgcctgccgccggacaaaaacggacccttgaagccgcg
cggcgcggccaggtggacgtcctcatcggcacccaccgcatgctctccaaggacgtggag
ttcgccaatctggcccttttgatcctcgacgaagagcagcggttcggcgtcaagcacaag
gagcgcatcaagaaaatgcgttcgaccatcgatgtcctgaccctgaccgctacgcccatc
ccgcgcaccttgcagctctccctgtccgggatccgaggcttaagcgtcatcgagactccg
ccgcgcgaccgcaagccggtggagacctcattgctggaacgcgatccggcccagctcaag
gccatcttggagcgtgagctggcccggggcggccaggttttttgggtctacaaccgggtg
cagggcctggagcgggtggtggagttcgtgtcctccctggttcccggcgcgcgggtcggc
atgggacatggccagatgaaggcccacgatctggaagaaaccatgcacaagttctggcat
ggcgagctcgacgtgctggtctgcacggccatcatcgagtcgggcctggactttccccgc
gccaacaccctcatcgtcgatcaggcccagctcttcgggctcggtcagctgtaccagctg
cgcggccgggtggggcgctccagcgagcaggcctatgcctatttcatcatccccgacctg
gaccgcctgcaggaaacctcgcgcaagcgcctcaagatcatcctcgacatggattatctg
ggcgcgggcttcaaggtggccatggaggacctgcgcctgcgcggagccggcaatatcctc
ggcgaggcccagtccgggaccatcggcaaggtcggcctcgacctctttttggaaatgctt
gaggaagaagtgaccagattgcgcggcggaaaggtcgaaacggagatcgagccggagctc
aatcttggcttccaggccctcatccccgaagagtacgtggccgacggcaaggaacgcctg
cattattacaaggccctgtcctcctgtcacgatgagggggccatcgtcgaaatcgtggac
gacatgcgcgaccgcttcggctctctgcccgaggcgctgaagacctttgtggccgtgctc
atgatcaagatcgacgcccgcaggctgggcgcggtgcgggtggacctgttcgaagaccgg
gctcttatccactgggacgaaacccggcacaatgtcgacctttccaagctcatgggctgg
gtgggcgaaaatgccgcctgcgcccggattctgccaccggccaagctggaactgcgcctg
cctgccgcggcctcgccgacccatgctatgcatgcgttgaaagaccagctgctggtgctc
agagagcggatcaagctgtga
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