Dehalococcoides mccartyi 195: DET0551
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Entry
DET0551 CDS
T00223
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
det
Dehalococcoides mccartyi 195
Brite
KEGG Orthology (KO) [BR:
det00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DET0551 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
det03021
]
DET0551 (rpoD)
Transcription machinery [BR:
det03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DET0551 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
CENP-B_N
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
AAW40151
UniProt:
Q3Z904
LinkDB
All DBs
Position
complement(506110..507672)
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AA seq
520 aa
AA seq
DB search
MPAEKDKKEFSPDDTYDDKDIEDGLEDIHEEQDAEAENDKMAEPDLKDIADTDIPAELTE
EELAAEADMMPDTDEEIGPLNIDLEIPLEQIDTQGIVDDPVRMYLHEIGRVPLLSAEDEK
TLAKKMEEGKRIREIRQECLEKRGRYPSAAESFLCMLRELSQATEVLFQLGQELGMDTSA
SLKNVIHDPKLRTAIDHEIDQQLTKNISDNTGKSMAEIEQSFINLAINSSLLPKVILDAI
PEKMTIPEIATYTNDPAFISHLERHEASLKYYLDNLEIDAKRAERHLIQANLRLVVSVAK
KHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQAITRAIADQARTIRI
PVHMVETINKLLSISRQLSQKLGREPTPDEIAVEMDLPPEKVREIAKVSQLPVSLESPIG
EEEDSHLGDFIEDQNALAPPDAASRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRT
LEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYLE
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgcccgctgagaaagataagaaagagttcagccctgacgatacttatgatgacaaagat
atagaggatgggctggaagatatccatgaggaacaggatgccgaagctgaaaatgacaaa
atggcggagcctgacctcaaagatatagccgataccgacatcccggccgaactaaccgaa
gaagagctggcagccgaagcggatatgatgccggacacggacgaagaaatcggcccgctt
aatattgaccttgaaataccgcttgagcagatagatacccagggtatagtagatgacccg
gtgcgcatgtatctgcatgaaatcgggcgggtacccctgctttccgctgaagacgaaaaa
accctggccaagaaaatggaagaaggcaaacgcatacgcgaaatccgccaggagtgcctg
gaaaaacgcgggcgttacccttcggctgcggagtctttcctgtgtatgctcagggaactt
tcccaagcaaccgaagtcctgttccagttaggacaggaactgggtatggatacttctgcc
agcttgaaaaatgttatccatgaccccaaactaagaacagctattgaccatgagattgac
cagcagctcactaaaaatatttcggataataccggcaagagcatggcggaaattgagcag
tcatttatcaatctggctatcaacagctctctcctgcctaaggttatactggatgccata
cctgaaaaaatgactatccctgaaatagccacctataccaatgaccccgcctttataagc
catctggagcggcatgaagccagccttaagtattatctggacaaccttgagatagacgcc
aaacgggcggaacgccaccttattcaggctaacctccgtctggtagtcagcgtggctaaa
aaacacatcggcagaggcatgcccctgcttgaccttatacaggaaggcaatatcggcctt
atacgggcagtggaaaagtttgacttccaccgcggtttcaagttttccacttacgccacc
tggtggatacgccaggccattacccgggctattgcagaccaggccagaactatccgcata
cctgtccatatggttgaaactatcaacaaactgctttccataagccgccagttatcccag
aaactggggcgtgagcctactcctgatgaaatagcggttgagatggacctgccgccggaa
aaggtgcgtgagattgccaaggtttcccagctgccggtttcgctggagtcccccatcggc
gaagaagaagacagccacctgggagactttattgaagaccagaatgcactggctccgccg
gatgccgcttcacgccagctgctcaaagagcagatagatacagtgcttggcagcctgacc
ccgcgtgaacgccgggtacttcagctgcgtttcgggctggaagacggccgcagccgtacg
ctggaagaagtaggcaaagagtttaacgttacccgtgaacgtatccgccagatagaagcc
aaggctctgcgtaaactccgccaccccagccgcagccgcaaactaaaagattatctggaa
taa
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