Dehalogenimonas etheniformans: HX448_03130
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Entry
HX448_03130 CDS
T08265
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
deth
Dehalogenimonas etheniformans
Pathway
deth03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
deth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HX448_03130 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
deth03400
]
HX448_03130 (ligD)
Enzymes [BR:
deth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HX448_03130 (ligD)
DNA repair and recombination proteins [BR:
deth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HX448_03130 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QNT75749
LinkDB
All DBs
Position
283611..285740
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AA seq
709 aa
AA seq
DB search
MPPAKRKRKPDPLPTEMPDGAVEAPVPRSISPMLAQLGREPPQGDEWIFEPKLDGFRTLA
FIDSGKVTLRSRNDTDMSRYFPAIVTGLSNLKHPSVIFDGEIVAIDEKGKTCFQCLQQLV
GLPHQHTGKQFNTVYYIFDVLYLDGFDLTGVAWDNRHAILKRVFNPGPNLKLVSDFEGDG
AKIFQASVDAGMEGIVAKMRKGIYLAGKRSSEWIKVKHTQSEEFVIGGFARGYGKRSENF
ASLLLGYYDKGKLIYAGSVGTGFDGSTLREIEARLKPLVTDKPPFSATFEYAEGVTWVKP
RLVAEVKFAEWTPGGLLRHAVFLRLRGDKAAKDIIRSQVEAPSPFSGSSTVELSGSTRQI
LEALQNLDDDVRVKSENHEVSLTRMNKVLWPEYRGRKALTKRDYIRYLVEVAPYILPHLK
DRPLTLTRYPNGILEDRFYQKHWETELPKFVETVSIFSKENDAFQDYLLCNNLATMIWLG
QLADLEIHTWYSRVGERPDRPDISGYRGSPDHLGDYLAGIPDFVVFDIDPYIYSGEEAAG
GEPELNKDAFKAAVEAALWVKEAVESVGLTPFIKISGKTGLHLFTPIRRQFNYDVTRDFA
GVISRLVESQYPDKITTEWAVEKRRGKIFLDYRQNVRGKTVASVYSARPTPWAGVSLPVK
WEELEHIYPGDFNILNVPSRLATLGDVWADIMKSKKPLKTEIVPGKNSS
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctgcgaaacggaagcgtaaacctgatccgctaccaaccgagatgccggatggg
gcggtagaggctccggtgccccggtccatctccccgatgctggcccagctcggcagagaa
ccgccccagggcgacgaatggatcttcgaacccaagctggacggcttccgcacactggct
ttcatcgacagcggcaaggtcacactccggtcgcgtaacgacaccgatatgtcccgttat
ttcccggcaatcgtcacaggattatccaacctgaaacatcccagcgttattttcgacggc
gaaatcgtcgctattgatgaaaaaggcaagacttgttttcaatgcctgcagcagctcgtc
ggcctgccgcaccagcacaccggcaagcagttcaacacagtctattacattttcgatgtc
ctgtatctcgatggcttcgatctgacgggtgtcgcatgggacaaccggcacgcgattcta
aaacgggtcttcaatcccgggccgaatctgaagttggtgtccgatttcgagggcgacggc
gccaagattttccaagcctcagtcgacgccggtatggagggcatcgtcgccaagatgaga
aaggggatatatctggcgggcaaacgctcatccgaatggatcaaggtcaagcatactcaa
agcgaagaatttgtcatcggcggcttcgccaggggttacggcaagagatcggaaaatttt
gcctctctattgctggggtattatgacaaaggcaaactgatctacgccggaagcgtcggt
accggatttgatggttcgactctaagggaaatcgaagccaggctgaagccgctggtcact
gataagccgcctttctcggcaacttttgagtacgccgagggggtgacctgggtgaaaccc
agactggttgccgaggtgaagtttgccgagtggacgcctggaggattgctccgccacgcc
gtgtttctgcgcctccgaggagacaaagccgccaaggatataatccgttcccaggtagag
gcgccttctccgttttcgggatccagcaccgtcgaactaagcggatcgacgcggcagata
ctcgaggcgctgcaaaatctggacgatgatgttcgggtcaaatccgaaaatcacgaagta
tccctgacccggatgaacaaggtgctctggcccgagtaccgcggtcgtaaggcgctgacc
aagcgcgattatatccggtacctcgtcgaggttgcgccttacattttacctcaccttaaa
gacaggcccctcactctaacccggtacccgaacggcattctggaagaccggttctaccag
aaacactgggaaacggaactgccaaagtttgtcgagacagtcagcatcttttcaaaggaa
aacgacgcctttcaggactaccttctttgcaacaacctggccaccatgatctggttgggg
cagttggcggaccttgaaatccatacttggtactcgcgggtcggggagaggcctgacagg
ccggatatctccggatacagaggaagcccggaccatctgggcgactatttagcaggtata
ccggattttgtggttttcgatatcgatccctatatctattcgggggaggaggccgcggga
ggggagccggagctgaataaagatgcgttcaaagccgccgtcgaagccgcgttatgggtc
aaggaggcggtcgaatcggtaggactcactccatttatcaaaatttccggcaagaccggc
ttacatctgttcactccgatcaggcgccaattcaattatgacgtcacccgcgattttgca
ggggtaataagccgactggttgagagccagtaccccgacaagataaccacggagtgggcg
gtggaaaagcggcgcggcaaaatattcctggactatcggcagaacgtccggggcaaaacg
gtagcttcggtttattcggcgcggcccacgccgtgggcgggggtgtcgctacctgttaaa
tgggaggaactggaacacatttatccgggagatttcaatattttgaacgtgccttctcgc
ctggcaacactaggcgatgtgtgggcagacatcatgaaatccaagaagccgttaaagaca
gaaatagtgcccggaaaaaactcctcctga
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