Cavenderia fasciculata (cellular slime mold): DFA_02210
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Entry
DFA_02210 CDS
T02668
Name
(RefSeq) NOT2/NOT3/NOT5 family protein
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFA_02210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_02210
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DFA_02210
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
DFA_02210
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
PEHE
RNA_pol_Rpc4
eIF-3_zeta
Afi1
EOS1
EIF4E-T
Motif
Other DBs
NCBI-GeneID:
14871485
NCBI-ProteinID:
XP_004357694
UniProt:
F4PYF6
LinkDB
All DBs
Position
Unknown
AA seq
530 aa
AA seq
DB search
MNIRSPTLQNPSSINSSNGGRPPHHSTTPPLQSSLGGPTMLSGNAPTNPNRLIPSSLMSG
GVSSIPSGGIGRVGGGGGVVVGGGGGGIGMMPSSSNPSSFASQVQKGLHYGVGGGGGQQQ
QKDNSNDAYDPNDFPALSSSSLMKKNTPLQSSSPSSYHPSPISMSSNTSIAVGPTLSPSP
IAPSNTISPSSSMSQPGMISSNISNAPTTAAAILQAAASTSSSSSSSSSPNATLNQPEGA
SESEKGIYSMLKSKASSTGDTVSSTEKQQQSNVHKYGLLGLLNIIKTTDVDLSTLSIGID
LTCLGLNLNSSGDLYNTFGSPWYDIPISRKPEYYLPLCYSTPGLDTPSKKICLFTYEALF
YIFYSMPKDILQIQAAMELYDRDWRYHKEGRVWLTKVPNTDFQTTPQYEVGSYFIFDVSN
WETVRRDNFVLHHNLLEPREQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
PSLSTSNPSLQTTSSSLNSPIPMSSSAPSSSSILSPNAVIGSSLNIVGSN
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgaatattagatcaccaactcttcaaaatccatcatcgatcaattcaagtaatggtgga
agaccaccccatcacagtactacaccacctttacaatcatcacttggtggcccaacaatg
ctcagtggtaatgcaccaaccaacccaaatagattaatcccttcatctctaatgtctggg
ggtgtatcttcaataccatctggaggaattggaagagtaggaggaggaggaggagtagta
gtaggaggaggaggaggaggaataggaatgatgccttcttcctctaacccttcatctttt
gcaagtcaagttcaaaaaggattacattatggagttggtggtggtggtggacaacaacaa
caaaaagataatagtaacgatgcctatgacccaaatgatttcccagcactttcgagcagt
tctttaatgaaaaaaaatactcctttacagtcttcctctccttcatcttatcacccttca
ccaatctcaatgtcctccaatacatcaattgcagttggtccaacattgtctccgtcacca
attgcaccttcaaatacaatctcaccgtcctcatcaatgtcacaaccaggcatgatatcc
tcaaatatatctaatgcacccactacagcagctgccattcttcaagcagcggcttcaaca
tcttcttcttcttcttcttcttcttcaccaaatgcaacactaaatcagccagagggtgct
agcgaaagtgaaaaaggtatttattcaatgctaaaatcaaaggcatcgagtactggtgat
acggtatcatctaccgagaagcaacaacaatcaaatgtacataaatatggcttattggga
ttattaaatataatcaaaacgacagatgttgatcttagtaccctctcgataggaattgat
ctaacatgtttgggattaaacttgaattcttctggagatttgtataatacatttggttca
ccatggtatgatattccaattagtcgtaaacctgaatattatttgccattgtgttatagt
acccctgggcttgacaccccatcgaaaaaaatctgtttgttcacttatgaagcattgttt
tacatattctattcaatgccaaaggatatattacaaatacaagcagcaatggagctatac
gatagggattggagatatcacaaagaaggcagagtttggttgaccaaggtacccaacact
gattttcaaaccactccacaatacgaagttggcagttattttatttttgatgtctcaaat
tgggagactgttcgtcgagataattttgttttacaccataacttgttggaaccaagagaa
caacagcaacagcaacagcaacagcaacagcaacagcaacagcaacagcaacagcaacag
caacagcaacagcaacagcaacaacaacaacaacaacaacaacaacaacaacagcaacaa
ccatcactatcaacctccaacccatcactacaaactacttcgtcgtcgctcaattcacca
ataccaatgtcctcatctgcgccatcatcctcttctatattatctccaaatgcagttatt
ggttcgtcattaaacattgttggcagcaattaa
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