Cavenderia fasciculata (cellular slime mold): DFA_07199
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Entry
DFA_07199 CDS
T02668
Symbol
repD
Name
(RefSeq) transcription factor IIH component
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03022
Basal transcription factors
dfa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DFA_07199 (repD)
09124 Replication and repair
03420 Nucleotide excision repair
DFA_07199 (repD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfa03021
]
DFA_07199 (repD)
03400 DNA repair and recombination proteins [BR:
dfa03400
]
DFA_07199 (repD)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
DFA_07199 (repD)
Transcription machinery [BR:
dfa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
DFA_07199 (repD)
DNA repair and recombination proteins [BR:
dfa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
DFA_07199 (repD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
14872306
NCBI-ProteinID:
XP_004367065
UniProt:
F4PVR8
LinkDB
All DBs
Position
Unknown
AA seq
791 aa
AA seq
DB search
MKFYLDDLLVYFPYAFIYPEQYNYMLHLKRSLDNGGPCMLEMPSGTGKTVSLLALISSYQ
VKNPNVKLIYCSRTVPEIEQAVEEARKVLAYRNAELGDKAPKTLCMAMSSRRNLCVHPRV
SSEREGKTVDSLCRDLTSPWIRDNPQADKCSFNENFESNGQEILLEGVYNIGDLKEFGLK
NQMCPYFLSRRIINFANIVIFSYQYMLDPKIASLITASFDSNSIVVFDEAHNIDNVCINS
LSVNIDNRILEAGSRNITKITGQIDKVKAIDEKRLKDEYSRLLGGLARTGASNRDELMTD
PVLPADVIREAVPGNIRKAEHYLSLMRRFMDYLANRLRSQTLISESPMAFLQSLYHTTSI
NAKTLRFCSQRLSSLLRTLQISDINQFSGIGVIADLATLIGTYNKGFLIIIEPFDQRSPN
QFDPVFQFCCLDASIGMKPIFDKFKNVVITSGTLSPLDIYTKILNIRPTTVERLPMSLIR
DSICPCILTRGSDQISVSTKFDVRSDTTVIRNYGSLLVEMSSIVPDGIICFFTSYSYMEQ
IVSVWNEMGLLNKVLSNKLIFVETSDPAESALALQNYKKACDNGRGAVLLSVARGKVSEG
IDFDHHYGRCVILYGIPYINTESRVLRARLEFLRDQFQIKESEFLSFDAMRTASQCVGRV
IRGKTDYGIMIFADKRFNRLDKRNKLPQWINQSCKPEHLNLSTDMAVGLCRKFLRDMAQP
IPRNQQLGKVLWSIKDVEKQEPSKNQSSSTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNN
NNGNTAQNGNH
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgaagttctatttagatgatttattagtttactttccatatgcattcatctacccagag
caatacaactatatgttgcatttgaaacgatctcttgataatggtggaccgtgtatgctt
gaaatgccatcaggtacaggaaagacagtatcattattagcattgatttcatcgtatcaa
gtaaagaatccaaatgtaaagttgatctattgttcaagaaccgtacctgaaattgaacaa
gctgtagaagaagcaagaaaggtacttgcctatagaaatgcagagttgggagacaaagca
ccaaagactctttgtatggcaatgtcatctcgtcgtaatctttgtgtacatccacgtgtc
agctctgaacgtgaaggaaagactgtcgacagtctatgtcgtgatttgactagtccttgg
ataagagataatcctcaagctgataaatgttcatttaatgaaaattttgaatcaaatgga
caagaaatattattagagggagtttataatattggagatttgaaagaatttggtttaaag
aatcagatgtgtccttatttcctatcaagacgtattatcaattttgcaaacattgtcatc
tttagttatcagtatatgttggatcctaaaattgcttctttaatcactgcttcttttgat
agtaattctatcgttgtttttgatgaagctcataatattgataatgtttgtattaattct
ctaagtgtgaatattgataatagaatacttgaagctggttcaagaaatataacaaaaata
acaggtcaaattgataaagtaaaagcaattgatgaaaaaagattaaaagatgaatattca
agattattaggtggattggcaagaacaggagcatcaaatagagatgaattaatgacagat
ccagtattaccagccgatgttattagagaggctgtacctggtaatattagaaaggcagaa
cattacctatcactgatgagaagatttatggattatcttgccaatagattaagatcacaa
actcttatatcagagagtccaatggcatttttacagagtctctatcacaccacttcgatc
aatgccaaaacacttagattttgttcacaacgtctaagttctctactacgtactcttcag
atatcagatatcaaccaattctctggtataggagttattgccgatcttgcaactcttatt
ggtacatacaacaagggtttcctcattattatagaaccttttgatcaaagatcaccaaat
caatttgatccagtatttcaattttgttgtttagatgcatcaattggtatgaaaccaata
tttgataaatttaaaaatgttgttattacttctggtactctttcaccattggatatctat
acaaaaatattaaatattagaccaaccactgttgaaagattaccaatgagtcttattaga
gattcaatttgtccatgtattttaacaagaggtagtgatcaaatttcagttagtacaaaa
tttgatgttagaagtgatactactgtaattagaaattatggatcattgttggtcgagatg
tcatcgattgtacccgatggtattatttgcttttttacaagttattcctatatggaacag
attgtgtcggtttggaatgaaatgggtcttctcaacaaggtactcagtaacaagctgatt
tttgtcgaaacatctgatcctgccgaatcggcactggctctacaaaactataaaaaggca
tgtgacaatggaagaggtgctgtcttgttgtcagtggctcgtggaaaggtttcagaaggt
atcgatttcgatcatcactatggtcgatgtgtcattctctatggtattccatacatcaac
actgaaagtagagtattacgtgctagattagaattcttgcgtgatcaattccaaatcaaa
gaaagtgaattcctttcttttgatgctatgagaactgcttctcaatgtgttggtagagtt
attagaggtaaaactgactatggtattatgatttttgctgacaagagatttaatagatta
gataaaagaaacaaattaccacaatggataaatcaatcatgtaaaccagaacatttaaat
ctttcaacagatatggcagttggattgtgtcgaaaattccttagagatatggctcaacca
atcccaagaaaccaacaacttggtaaagtcttgtggagtattaaagatgttgaaaaacaa
gaaccaagtaaaaatcaatcatcatcaactacaactactacaactactacaactacaaat
aataataataataataataataataataataataataataataataataataataataat
aataatggtaatactgcacaaaatggaaatcattaa
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