Cavenderia fasciculata (cellular slime mold): DFA_07810
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Entry
DFA_07810 CDS
T02668
Name
(RefSeq) RING zinc finger-containing protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DFA_07810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dfa03000
]
DFA_07810
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_07810
04121 Ubiquitin system [BR:
dfa04121
]
DFA_07810
Enzymes [BR:
dfa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
DFA_07810
Transcription factors [BR:
dfa03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
DFA_07810
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
DFA_07810
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
DFA_07810
Ubiquitin system [BR:
dfa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
DFA_07810
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Rtf2
Furin-like_2
Motif
Other DBs
NCBI-GeneID:
14869736
NCBI-ProteinID:
XP_004355306
UniProt:
F4Q3G3
LinkDB
All DBs
Position
Unknown
AA seq
1244 aa
AA seq
DB search
MADDDDDLCPLCCNVLSKDDRRFRPCPCGYQKIRETEHNRCPACRQTYDQDNFAYLSSDE
EDEEDSEDERRSRRRTSTSSTSNNNNNSSSSSSSHTISSLTTSGSSIPSDTIKKALSTVR
VIQRNLVYVTNLAMGVAKPETLKKNEYFGQYGKILKVVINKNHIYNANSPHGACVSAYIT
YQRKEDALSAIQSIDGATVEGRTLRASFGTTKYCSYFLRKLQCNNPDCMYLHEWGQEDDS
FTKEDMTNINRLYIGHNEPAVVISPTAAVAGGQPPLSSSTPGTTSTSSSYKKPISLSTSN
SSTPTNQSLSSSGKTWNITNTHLSSSLNPLEWPSASDALTMNSSTSPPLTKSQERPLPSN
SSWGSGMRMSSSTVKNSQDDMMEGNPMGPSSASLLASSGNNIPTSSPSVIATTPAPVPVV
VVPVPLPVVVPIPVPTPPPITVITTPPTPTTNVINTTSSSSSSSSNITSTSTTTSNTVTT
ETKLMVNNAPPPSSFPPLSSLGGKNKRDKSSKDPSSPSTVLSPGTQLKKEEKERIEREKL
EKLEREKEKQLEKERQMEKERLLSLERERQAEKEKMLEKERLEKEKQLEKEKEKQEKERL
ERLEKARLEILEKEAADLAILQSIQPTLSSLPMSIGGQKNMVNKSHTNDIVEPIANWEGL
IPDDQPTDINFDWLPIKGNSPQSSTMIDLLLNTETQKPSEGRRKTSRFEFAKEKDSSNQQ
QQQQSSFLQTSPLIVPESFLSGFKSNASSSSSSLNNSNSNILLNNSNNNNNILNPTSSLM
ENLSLSMENSFLSNQTPNSPTTTTTTTTTTTNILDNTTTTTTTTTSTSSPPGATLEDSQQ
LFRSLFPSINIRFSNSRLSETKMDSPSYVDSSKQMHQFQDPAIIGGGNGDWRGPSLHKSG
NSIVSPPPGFMINTPPPGFGGASVASPPPGLPPGFGGVVSQPPGLPPGFGGVVSQPPPGL
PPGFGQPPSQPPGFNVVPKQQQENGMDEYLELEKTKNKESRNKTKKLNEINNNNNNNNNN
GNNGYMNGGGSSSPPIMNEDQLQQQQYIQQLLQQQAQQQQQQQQQAQQQQNITQLLQLQQ
QQQQQSKRVDDLFSNIPSPSNFSQPNQVPLFPMNPPYPYPNMMKQPPQMNQQPFPYSFSN
FSSPQRPQQPQQQQQQQQLNNNTNNKNFTEFIGQFDQQRVNGISSADELLKQHFNQQLQQ
QQQQQNMGNFESLDQQVMNASKEVKDLESKWQQTKLRNNQAYYR
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgacgatgatgatttatgccctctctgttgtaatgtactttcaaaggatgat
agaagattcagaccttgtccttgtggatatcaaaaaattagagaaacagaacacaataga
tgtcctgcatgtcgtcagacctatgatcaagacaactttgcatatctttcatccgatgaa
gaagatgaagaggatagcgaagacgagagacggtcgagacgtagaacatcgacatcatca
acgagcaacaacaacaacaacagcagcagcagtagtagcagccacaccatttcatcttta
acaacatcaggctcatctataccgtcagacactataaagaaggctttgagtactgtaaga
gttattcaaagaaatttggtctatgttacaaatcttgcaatgggtgttgcaaaaccagag
acattaaaaaagaatgaatattttggtcaatatggaaagatactaaaggttgtaatcaat
aagaatcatatttacaatgccaattcaccccatggtgcatgtgtaagtgcctatatcact
tatcaaagaaaggaagatgccttatctgccattcaatcaattgatggtgctaccgttgaa
ggtagaacattaagagcatcatttggaacaaccaaatattgttcctatttccttagaaaa
cttcaatgtaataatccagattgtatgtatctccatgaatggggtcaagaagatgatagc
tttacaaaggaagatatgacaaatataaatcgactttatattggtcacaatgaaccagct
gttgtgatttcaccaacagcagcagttgcaggtggtcaaccacccttgtcatccagcact
ccaggtactacatcaacatcatcatcttataaaaaaccaatttccttgtcaacatctaat
tcatcgacaccaaccaatcaatcattatcatcttcaggtaaaacatggaatattacaaat
acacatttatcatcatcattaaatccattggaatggccatcggcatcggatgcattgacc
atgaactcatccacttcaccaccacttactaaatctcaagagagaccattaccatccaat
tcatcgtggggatcaggaatgagaatgtcatcatctacagtcaagaattcgcaagacgac
atgatggaaggaaaccctatgggaccatcatcggcatcattgttggcaagttctggtaac
aacataccaacatcatcaccatctgttattgccaccacacctgcacctgtccctgttgtt
gtagtacccgttccattacccgttgttgttcccatcccagtcccaactccaccacctatc
actgttatcactactccaccaactccaactaccaatgttattaatacaaccagtagtagt
agtagtagcagcagtaatattaccagtacaagtacaactactagtaatacagttactact
gaaaccaaacttatggttaataatgcaccaccaccatcttcattcccaccactttcatct
ttgggtggtaaaaacaagagagataaatcatcaaaggatccttcatcaccatctactgtt
ttatctccaggtactcaattgaaaaaagaggaaaaggaaagaatagaaagagaaaaacta
gaaaaattggagagggaaaaggagaagcaattggaaaaggagagacaaatggaaaaggaa
agactattgtcattggaaagggaaagacaagcagaaaaagaaaaaatgttggaaaaggaa
agattggaaaaggaaaaacaattggaaaaggaaaaagagaaacaagaaaaggagagattg
gagagattggaaaaggcaagattagagattttggagaaagaggctgccgatctggccatc
cttcaatccatacaaccaaccctttcatcattgccaatgtcaattggcggccaaaagaat
atggtcaacaagagtcacaccaacgacattgttgagcccattgccaactgggaggggttg
attccagatgaccagcccaccgacattaactttgactggttaccaatcaagggcaacagt
cctcagtcgtcgaccatgattgacttgctcctcaacactgaaacccaaaaaccatccgaa
ggtagaagaaagacatcacgttttgaatttgccaaggaaaaggattcatccaatcaacaa
cagcaacaacaatcatcattccttcaaacatcaccacttattgtacctgagagtttcctt
tctggattcaagtccaatgcatcatcttcatcttcatctctcaacaatagcaatagtaat
atattattaaacaatagcaacaacaataataatattttgaatccaacatcgtcattgatg
gaaaaccttagtctgtctatggaaaattcatttttatcaaaccagacacccaactcgccc
actactaccaccaccactactacaaccaccaccaacatcctcgacaataccactaccacg
actaccacgaccacctctacttcgtcaccaccaggtgccacgttggaagattcacaacaa
ttgtttagatcattgttcccatcgatcaacattcgtttctccaactcgagattgtcagag
actaaaatggactcaccctcctatgtggacagctccaagcaaatgcatcaattccaagac
ccagccatcattggcggtggaaacggtgactggagaggaccaagtctccacaagtctggc
aatagcattgtatcaccaccacctggctttatgatcaataccccaccaccaggttttgga
ggtgccagtgtagcatctccaccaccaggtctaccacccggttttggaggtgtcgtcagt
caaccaccaggattaccaccaggttttggaggcgttgtcagtcaaccaccaccaggatta
ccacctggttttggtcaaccaccaagccaaccaccaggtttcaatgtcgttcccaaacaa
caacaagaaaatggaatggatgaatatttggaattggaaaaaactaaaaataaggaatct
aggaacaaaactaaaaaattaaatgaaatcaataacaataataacaataataataataat
ggtaataatggttatatgaatggtggtggatcatcatcaccaccaataatgaatgaagat
caattacaacaacaacaatatatccaacaacttttacaacaacaagctcaacaacaacaa
cagcaacaacaacaagctcaacaacaacaaaatataactcaacttttacaattacaacaa
cagcaacaacaacaatcaaaaagagttgatgatttgttttcaaatattccatccccatcc
aatttttcacaaccaaatcaagttcctcttttcccaatgaatccaccctatccatatcca
aacatgatgaaacaacctccacaaatgaaccaacaaccttttccatactctttttcaaac
ttttcatcaccacaaagaccacaacaaccacaacaacaacaacaacaacaacaattaaat
aataacactaataacaaaaattttacagaatttattggtcagtttgatcaacaaagggtc
aatgggatatcaagcgcagacgaacttttaaaacaacattttaatcaacaattacaacaa
caacaacaacaacaaaacatgggtaattttgaatctcttgatcaacaagtgatgaatgca
agtaaggaagttaaagatttggaaagtaaatggcaacaaacaaaattaagaaataaccaa
gcctattatcgataa
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integrated database retrieval system
