Cavenderia fasciculata (cellular slime mold): DFA_08642
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Entry
DFA_08642 CDS
T02668
Symbol
ddx27
Name
(RefSeq) putative RNA helicase
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dfa03041
]
DFA_08642 (ddx27)
03009 Ribosome biogenesis [BR:
dfa03009
]
DFA_08642 (ddx27)
Enzymes [BR:
dfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DFA_08642 (ddx27)
Spliceosome [BR:
dfa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
DFA_08642 (ddx27)
Ribosome biogenesis [BR:
dfa03009
]
Eukaryotic type
Pre-60S particles
Helicases
DFA_08642 (ddx27)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
14868818
NCBI-ProteinID:
XP_004356130
UniProt:
F4Q3I8
LinkDB
All DBs
Position
Unknown
AA seq
860 aa
AA seq
DB search
MVVNKSVKRKVDDFVMTIDDDDEEIDTNVDIDEDDESEAEEDEVEEIENKKKKKTKKQKE
STTTTTKNNNNNNNATPTIENEDDMDEEFDFEEGAQVVLPWDFAPTIEKMKRTQPSNPNI
TSLEDKIKKRLDLKKFKGEDTKVKVEGDGDDQELENESDDEDIKDNEEKEQDESDSDSDS
EVEEVEEVEEEEQKVPKNNNTNKSIPKVKVEPLDTLKTLESNKRMKKEVVMDLPTFEELH
LSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILERLLYRD
ATHRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQEHELRKRPDVII
ATPGRLIDHLLNAHDVGLEDIEILVLDEADRLLDMGFKDELNRVVESCPDGRQTLLFSAT
LSDDVKLLAKLSLSQPVRVAVDALFQVASTLEQEFIKIKPGQLADRTAMLLSLCTRVFNG
GGCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQRFEALQSFRNGEVDFLLATDIA
ARGLDVLGVRTVINYNMPRSLAQYIHRVGRTARAGLAGRSCSFITEADRKILKDIVSRAK
TKAKSRTVAQESIKLWRAKIDEMTDDVKDIIREELRELDFKKTEKDLMKAERIVANALGH
KKLITDNGGIIPEAAPMERVWFQSKKEREESREAWKTENGIVSMDKDGKPVAGGKPARKG
VLLKKAPKDPYAGMSRKKRRSVMHREEMARDMAEQEDAFEGGSGGQPSKKEVAKKFRSEQ
NNQRASGKETKRIEALRRAGIYAGPTPQEKLKLDAKQAKKTAQIKKKKVGRDDFEKDITS
ISEGKSSFKKGKVVAKSKSS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggtagtaaacaaatcagtcaagagaaaggtcgatgactttgttatgaccatcgacgac
gacgatgaagaaatagacaccaatgtagatatcgacgaggatgatgaaagtgaagccgaa
gaagatgaagtagaagaaatagaaaacaagaaaaagaaaaagacaaagaaacaaaaggaa
tcaactactactactactaaaaataataacaataataataacgcaacaccaacaattgaa
aatgaagatgatatggatgaagagtttgattttgaagaaggagcacaagtagtattacca
tgggattttgcaccaaccattgaaaagatgaagagaactcaaccatctaacccaaatata
acatcattagaagataagattaaaaagagattagatttgaaaaagtttaaaggtgaagat
acaaaagtaaaggttgaaggagatggcgatgaccaagaattagaaaatgaatcagacgat
gaagatattaaagataatgaagaaaaggaacaagatgaaagtgatagtgatagtgatagt
gaagttgaagaagttgaagaagtagaagaggaagaacaaaaagtaccaaaaaataacaat
accaacaaatcaattccaaaagttaaagtagaaccattggatacattaaagacattagaa
tcaaacaaaagaatgaagaaagaggtagttatggatttaccaacatttgaagaactgcat
ttatcacgtccacttcaaaaggctgttgccaaacttggatacactcaaccaacacctatc
caagccaaggcaatcccactcattctcaacggcaaggacatattggctagtgctaccact
ggtagtggtaagacagccgcctttatcttgcctattttagagcgtctattgtaccgtgac
gctacacatcgtgtcagtcgtgtgttgattgttttgccaacacgtgaacttgcactacaa
tgtcactcggtgtttgaatcgttggctcaattcacaaacgtgcagtcgtgtcttgtggtg
ggtggtctctccaacaaggtgcaggaacacgagttgagaaaacgtccagatgtcattatc
gccacgcccggtcgtttgattgaccatcttttaaatgctcacgacgtcggtctcgaagac
attgagattctcgtgcttgatgaagccgatcgtctcttggacatgggtttcaaagatgaa
ctcaacagagtcgtagagagttgtccagacggacgtcagacactgctcttctcggccact
ctgtccgacgatgtcaagttgctcgccaagctgtcgctcagccagccggtgcgtgtcgct
gtagacgcgttgttccaggtcgccagcacactcgaacaagagtttatcaagatcaagcca
ggtcaattggccgaccgtaccgccatgctcctgtccctgtgcacgcgtgtgttcaacggt
ggaggctgcattgtctttttccgttcgaaaaaggaggtgcatcgtatcgccatcttactc
ggtctctcgggtctcaaagtcggcgagctgcacggtgatctcaaccaggagcagagattc
gaagcattgcagtcgttccgtaatggagaggtcgactttttgctcgccactgatatcgct
gcccgtggtctcgatgtgctcggtgtgcgtaccgtcatcaactacaacatgccacgtagt
cttgcacagtacatccacagagtcggtcgtaccgctcgtgccggtctcgccggtcgttcg
tgctcgttcatcaccgaagccgaccgcaagatcctcaaggatatcgtgtcgcgtgccaag
acaaaggccaagagccgtaccgtcgcccaagaatccatcaaactctggagagccaagatc
gacgagatgaccgacgacgtcaaagacattattcgtgaagagttgcgtgaactcgacttt
aaaaagacggaaaaggatctcatgaaggctgagcgtatcgtcgccaacgccctcggccac
aagaagctcatcaccgacaacggcggtatcatccccgaagctgcaccgatggagcgtgta
tggttccaaagtaaaaaggagcgtgaagagtcacgtgaggcatggaagactgagaatggt
atcgtgtcgatggacaaggacggcaagcctgtcgcaggtggcaaacccgccagaaagggt
gttctcctcaaaaaggcacccaaggatccatatgcaggtatgtctcgtaagaaacgtcgt
agtgttatgcatcgtgaagaaatggctcgtgatatggccgagcaagaggacgcctttgaa
ggagggtctggaggccaaccatccaaaaaggaggttgccaaaaagttccgttccgaacaa
aacaaccaacgtgcctctggcaaggagaccaagcgtatcgaagcccttcgccgtgccggt
atctatgctggtccaactccacaagaaaagctcaaactcgacgccaagcaagctaaaaag
actgcccaaatcaaaaagaaaaaggttggcagagatgatttcgaaaaggatattacctcc
atctctgaaggtaaatcttcatttaaaaagggtaaagttgttgctaaatctaaatcttct
taa
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