Cavenderia fasciculata (cellular slime mold): DFA_11037
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Entry
DFA_11037 CDS
T02668
Symbol
cpsf1
Name
(RefSeq) CPSF domain-containing protein
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Pathway
dfa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
DFA_11037 (cpsf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dfa03021
]
DFA_11037 (cpsf1)
03019 Messenger RNA biogenesis [BR:
dfa03019
]
DFA_11037 (cpsf1)
Transcription machinery [BR:
dfa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
DFA_11037 (cpsf1)
Messenger RNA biogenesis [BR:
dfa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
DFA_11037 (cpsf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
MMS1_N
Motif
Other DBs
NCBI-GeneID:
14866069
NCBI-ProteinID:
XP_004349975
UniProt:
F4QEG3
LinkDB
All DBs
Position
Unknown
AA seq
1627 aa
AA seq
DB search
MSSSPPVTGNFINNMVIDTTHAAPFNNSGGLPNASSTSTSTSTNNTSYLYHKQLHMPTGI
EFCIKGNVTSKDTVNLIVAKTTVIQIYSIKYEKNEQTEHQQQQKQHNSEESDMSFLDSSD
DDDDNQKDNSNNNNNNNNNNNNMTDQQKPWLELNYEKNLFGVIESLNCVRFPNEDRDCII
LTFKDAKLSILSFNQNTQQLDIHSMHYYERNEFKSGRETFRSPPILKMDYQQRCAVMLLY
DRHLVVLPFRHTMSSILDEEDEYEEEHMTKDSNNNNNNNNVNGKSTESSSSSFTSKGNLK
DSYIISLKSIGVENVKDLTFLHGYYEPTLLILHEPSQTWTARIAVKKLTSCLTAVTLNLS
QKQQSIIWSFDHMPYNCEKLLSVPEPLGGSLVITPNIMFYVSQSSRYALATNSYALIDTT
SPTGEPFAIPIDNSSTNLVFTMDCAVYSFLEKDRLLVSLKNGDLLIFHLISDGRSVQRIN
ITKAGKSVLSSNICVLSSTLLFLGSRLGDSLLLEYTEKVIDVDTNNVTENLSNPYKKQKT
SEVLFGEDDNPSTSIAEEEDDEADAIFNRSRYQTKSYQLTIRDHITNIGPISDMITGISY
ESNKGENEENEVDHTSSRNGKSSGNAVNLASIADRDYELVTCSGHGKNGAITILQKNVRP
DMIISFELSGVKQAWTLYYDPEQSSSKNKKRHLEIGQEQENEEEEEDINWHSYLVLSQEK
NTLIFHTAQELKEVATLSNPTVLAANLFNNKRLVFIHPTSIKVMNGHSSVTQEIKQSPIK
YAYVCDPYILLHHQDGNISLYKGNPKDLTISKLDIPFNSSKTTSIMTCSLFIDLNPISNW
WTFKKSNNQAGDIYLLILDSNYTLNIYLASDPTTPIFTTNHFNKELDILLNYNNNQQQQQ
QQNIQTNNLNFKEISIHYLSDSIWSVPYLVAINEYDQIYLYRGFKNEKNEISFKKIVNDV
YQELPLEQPMPTTTTSNNNNVKEKKKSSSSSSSSSTATSSSTPSSTTIINFNVEMNRRRI
IPFSNIGNKRGIFVSGVSTPIWIFSEKNFPRIHPMKQQQQTTSSSSSSSSSSKRPITTFT
TFHNINCKHGFIYFDHTGMLCICRLPDGTNYENEWPIRKLAIRMTCHKISYHPVQKCYVL
VLSYPQAPQSDEDEQEEQERELLKKPLVLEEKYQLKLIDPANNWNIIDSFSLAEKETVLC
SKIIYLRHADESDIIPKLKPFVIVGTAYTHGEDTVCKGRILIFEIVSHRNQFNTATSKST
TTTTTTTTATTNTEENNNQEQQQDKEEQDEEGKPKKDTESADEKPKVEEEEEEEEKEQDE
SPDQKIETEELQPQLQKRLNLLYEKDQKGPVTSIAGLNGLLIMSIGPKMIVNNFSSGSLI
GLAFYDTQIFIVSLNTVKNYILVGDMFKSISFFKLKVCIIQKKNIILLGKDYEEVSTYSS
DFIVDEKKLSMVLSDANRNIRMFSFDPSDPESRAGQMLLAKSSFHIGELNNKFVRIPMKN
TNYDNNSSSSSIIVNDKHLLFYGTLGGGINLLMPINKRFHEILHALETKLMHRGQTAGLN
PRGFRYGHHVNNTLGHLHNQYVVDGDLLTKFQSLSPDDAKQLATSIGSTTPIILDLLNQL
HQSYNWF
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcttcaccaccagttactggtaactttatcaataacatggtaatcgatactact
catgctgctccctttaataatagtggtggtctacccaacgcttcttccacatctacatca
acatcaacaaacaacactagttatttatatcataaacaactacacatgccaacaggaata
gagttttgtataaaaggaaatgtaacttcaaaagatactgtaaacctcatcgttgctaaa
actaccgtcattcaaatatattctataaaatatgaaaagaatgaacaaacagaacatcaa
caacaacagaaacaacataatagtgaagagtctgatatgtcttttcttgattcctctgat
gatgatgatgataatcaaaaagataatagtaacaataacaataataataataataataat
aataatatgacggatcaacaaaaaccatggttagaattaaattatgaaaagaatctattt
ggagtgattgaatcattgaattgtgttagatttccaaatgaagatagagattgtattatt
cttacatttaaagatgcaaagttgtctatattgtcatttaatcaaaacactcaacaattg
gatattcattcgatgcactattacgaaagaaacgaattcaagagtggaagagagacattt
agatctcctcccattcttaaaatggactatcaacaaagatgtgctgtcatgttgttgtat
gatagacatttagttgtactaccatttagacatacaatgtcttctattttggatgaagaa
gacgaatatgaagaagaacacatgaccaaggatagtaataataataataataataataat
gtcaacggtaaatcaacagaatcttcatcttcttcgtttacttcaaaaggaaatcttaaa
gattcctatattatatcattaaaatctattggtgttgaaaatgttaaagatttgacattt
cttcatggatactatgaacctactctactcattttacatgagccttcacaaacttggaca
gccagaattgccgttaaaaagttgacatcttgtttgactgctgtcactcttaatctctct
caaaagcaacaatctattatttggagttttgaccatatgccctacaattgtgaaaagtta
ttatccgttccagaaccacttggaggatcattggttataactccaaatataatgttttat
gtatcacaatcgtctcgatacgccctggcaaccaattcctatgctctcattgacactacc
tctccaactggtgaaccatttgccataccaatcgataactcgtcaaccaatcttgttttt
acaatggattgtgcagtctattcattcctcgaaaaagatcgtctccttgtttctcttaaa
aatggtgatcttttaatctttcacctcatatctgatggtagaagtgttcaacgtatcaac
attacaaaggctggtaaaagtgttttatcttcaaatatatgtgttttatcatcaacatta
ttatttttaggatcaagattgggtgattctctattattggaatatacagaaaaagttatt
gatgttgatacaaataatgttaccgaaaatttaagtaatccatataaaaaacaaaaaaca
tcagaagtattatttggagaggatgataatccgtcaacaagtattgctgaagaagaagat
gatgaggcagatgcaatttttaatagaagcagataccaaacaaagtcctatcaactcacc
attcgtgatcatattaccaatattggaccaatcagcgatatgatcactggtatctcttat
gaatcaaacaagggagaaaatgaagaaaatgaggtagatcatactagcagcagaaatggt
aaatcctctggtaacgcagtcaacttggcatcaattgcagatcgcgattatgaattggtt
acctgttctggtcatggtaaaaatggagccattacaattcttcagaaaaatgttcgtccc
gatatgatcatctcttttgaattgtctggtgtcaaacaagcatggactttgtactatgat
cctgaacaatcatcttcaaagaacaaaaagagacatctggaaataggacaagaacaagaa
aacgaggaggaggaggaagatataaactggcacagttatcttgttttgtcacaagaaaaa
aatactttaatcttccacactgctcaagaattaaaagaggttgctaccctttcaaacccc
acagttttggctgccaacctgtttaacaacaaacgattggtattcattcaccccactagt
atcaaggtgatgaatggacattcatctgtcactcaagagatcaaacaatcaccaattaaa
tatgcctatgtttgtgacccctacattttgctccaccaccaagacggaaatatatccttg
tacaagggtaacccaaaggatctcacaatctccaaattagatataccattcaattcaagc
aaaacaacatcaattatgacttgctcattatttattgatcttaacccaattagcaattgg
tggacattcaaaaaatcaaacaatcaagcaggtgacatttatcttttgatattggatagc
aattatactttaaatatttatctagcaagtgacccaacaacacccatatttacaaccaat
cattttaataaggaattggatattcttttaaattataataataatcaacaacaacaacaa
caacaaaatattcaaactaataatttaaattttaaagagatatcaatccattatttaagt
gattctatttggtcagttccatatttggtagcaattaatgaatatgatcaaatttatttg
tacagaggtttcaaaaatgaaaaaaatgaaattagttttaagaaaattgtcaatgatgtt
tatcaagaactacctcttgaacaaccaatgccaacaacaacaactagtaacaacaacaat
gttaaagaaaaaaagaaatcatcctcatcttcttcatcctcctctacagcaacttcttca
tcgacaccatcttcaacaacaatcattaatttcaatgttgaaatgaacagaagaagaatc
attccattttcaaatataggaaacaagagaggtatttttgtttctggtgtcagtactccg
atttggatattcagtgaaaagaacttccctcgtattcacccaatgaaacaacaacaacaa
actacttcctcttcttcttcctcttcctcttcatctaaaagaccaattacaacatttact
acctttcataatataaactgtaaacatggttttatctattttgatcatactggtatgttg
tgtatttgtagattaccagatggtacaaactatgaaaatgaatggcctattcgcaaattg
gccattcgtatgacttgtcacaagatatcataccatcccgtccaaaaatgttatgtattg
gtactcagttatccacaagcaccacaaagcgatgaagatgaacaagaggaacaagaaaga
gaacttttaaagaaaccattggtgctagaggaaaagtatcagttgaaattgatcgatcct
gcaaacaattggaatattatcgattcattttcacttgccgaaaaggaaaccgttttatgt
tccaagattatctatctacgtcatgccgatgaaagtgatattatccctaaacttaaacct
tttgttattgtaggcactgcttacactcatggtgaggatacagtttgtaaaggtcgtatt
ttaattttcgaaatcgtatctcatcgtaatcaattcaatacggcaacttcaaaatctaca
acaacaacaacaacaacaacaacagctacaacaaatacagaagagaataataatcaagaa
caacaacaagataaagaagaacaagatgaagaaggaaaaccaaaaaaagataccgaatca
gctgatgaaaaaccaaaggtagaagaggaagaagaagaagaagaaaaagaacaagatgaa
tcaccagaccagaagatagaaacagaggaattacaaccacaactacaaaaacgtctcaat
ttattatatgaaaaggaccaaaaaggaccagttacatcgatagctggtttgaacggttta
ttgatcatgtcaattggcccaaagatgattgtaaataacttttcaagtggatcactcatt
ggtttggctttttatgatacacaaattttcattgtcagtttaaatactgtcaagaattat
attctagttggcgatatgtttaagagtattagtttctttaaattaaaagtttgtattatt
caaaagaaaaatattattttattgggtaaagactatgaagaagtttcaacatattcaagt
gattttattgttgatgaaaagaaactatcgatggtcttgtcagatgcaaacagaaatatt
agaatgttttcatttgatccaagtgacccagagagtagagccggtcaaatgctcctggca
aaatcatcattccacattggtgaactcaacaacaagtttgttagaattccaatgaaaaat
acaaactatgataataatagtagtagtagtagtatcattgtaaatgataaacatttactt
ttctatggtacacttggaggagggatcaatctattgatgccaatcaacaagagattccat
gaaattctacatgctctagagacaaagttaatgcatagaggacaaactgctggtttgaat
ccacgaggtttcagatacggacatcatgtcaacaacacattgggacatcttcacaatcaa
tatgttgtcgacggagatttactcactaaattccaatcattatcaccagatgatgccaaa
caattggcaacctctattggatcaactacacccatcatattggatctattaaatcaatta
catcaatcctataattggttctag
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integrated database retrieval system
