Dickeya fangzhongdai DSM 101947: CVE23_13740
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Entry
CVE23_13740 CDS
T05277
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dfn
Dickeya fangzhongdai DSM 101947
Pathway
dfn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CVE23_13740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfn03400
]
CVE23_13740
Enzymes [BR:
dfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVE23_13740
DNA repair and recombination proteins [BR:
dfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CVE23_13740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
MFD_D3
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
HTH_53
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
ATZ96683
UniProt:
A0A2K8QT86
LinkDB
All DBs
Position
3105973..3109422
Genome browser
AA seq
1149 aa
AA seq
DB search
MPEQYRYTLPGKAGEQRLLGQLTGAACAVECAEIVERHAGLVVLITPDMQNALRLRDEIR
QFTAQPVMMLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPH
AFLHGHALMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPF
RIDFFDDEIDSLRLFDADTQRTLNEVEHIHLLPAREFPTDKTAIELFRSQWREQFEVRRD
AEHVYQQVSKGTLPAGIEYWQPLFFSQPLPALFSYLPADTLLVNTGDIQQGAERFWQDIQ
QRHDSRRVDPMRPLLPPDTLWLPVDSLFGELKQWPRVQLRSDTLPDKAANINLGYQPLPD
LAIQHQNKSPLDALRRFVEQFGGQIVFSVESEGRRETLQELLSRIKLSPAPVKSLEQTAS
PGCYLMIGASEHGFIDTLRQRTLICESDLLGERVSRRRQDSRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEDSA
PLHKLGGDAWTRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFD
TTPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTLEGKVDILIGTHKLLQSDVRW
RDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQRLNELVPEARITI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISSQTDVELRLPALLPDDFIPDV
NTRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQILGIKRIEG
NDKGGFVEFSQHNRVDPTHLIGLLQRDPKVYRLDGPSRLKFIKDLNGYPQRLTFITTLLE
EMAQHTCAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaatatcgctataccttgcctggcaaagcgggtgaacaacgcctgttaggt
cagcttaccggcgcagcctgcgccgtcgaatgcgccgagatcgttgaacgtcacgccgga
ctggtggtgctgattacccctgacatgcagaatgccctgcggttgcgcgacgaaattcgg
cagtttaccgctcagccggtcatgatgctgccggattgggaaacccttccgtacgacagt
ttctcgccccaccaggaaattatctccgcccgtttatccacgctgtaccagttaccctcg
ctgacgcgcggcgtgttgatcctgccggtcaataccctgatgcagaaagtgtgtccgcac
gcgttcctgcacggccatgcgctgatgctgaaaaaaggccagcgtctgtcgcgcgatagg
ctgcgcaatcaattggaacaggccggttaccgcagcgtcgatcaggtgatggagcatggc
gagttcgccacccgcggcgcgctgctcgacctgtttccgatgggcagcgaagagccgttc
cgtatcgatttcttcgacgatgaaatcgacagcctgcgcctgtttgacgccgatacccaa
cgcacgctgaatgaagtcgaacacattcatctgttgccggcacgcgagttccctaccgac
aaaaccgccattgagctgtttcgcagccagtggcgcgagcaatttgaggtcaggcgcgac
gccgagcacgtctatcagcaggtgagcaaaggcaccctgcccgccgggatcgaatactgg
cagccgctgttcttcagtcagccgttgccggcgctgttcagctatctgccggccgatacg
ctgctggttaataccggcgatattcagcaaggcgccgagcgtttctggcaggatatccag
cagcgccatgacagccgccgggtcgacccaatgcgcccgctgttgccgccggatacgctg
tggttgccggttgattcgctgtttggcgaactcaaacaatggccgcgcgtacaactgcgc
agcgacacgctgccggataaagccgccaatatcaatctgggttaccagccgctgccggat
ctggctatccagcaccagaataaatcgccgctggatgcgctgcgccgtttcgtggagcag
ttcggcgggcagattgtcttttccgtggaaagcgagggtcgccgggaaacgttgcaggag
ttgctgtcccgtatcaagctgtcccctgcgccggtgaagagcctggagcagacggcgtcg
ccgggttgctacctgatgataggcgccagcgagcacggctttattgataccctgcgccag
cgcaccctgatctgcgaaagcgatctgctgggcgagcgcgtcagccgtcgccgccaggac
agccgccgcaccatcaacaccgataccctgatccgcaacctggcggaattgcgcccgggc
cagccggtggtgcacctcgaacacggcgtcggccgttatgccgggctgaccacgctggaa
gcgggcggcatcaaggcggaatacctgattctgcattacgccggcgaagacaaactgtat
gtgccggtatcgtctttgcatcttatcagccgctatgccggcggcgccgaggacagcgcg
ccgttgcacaagctgggcggcgacgcctggacgcgggcgcggcagaaagcggcggaaaaa
gtgcgtgacgtggccgccgaactgctggatgtctatgcccagcgcgccgctcacaccggc
ttcgccttcaaacacgatcgggaacagtatcagctgttctgtcagggattcccgtttgat
accacgccggatcaggcgcaggccatcaacgccgtgctgagcgatatgtgccgcccgctg
gcgatggaccggctggtgtgcggcgacgtcggcttcggcaaaaccgaagtcgcgatgcgc
gccgcgtttctggcggtggaaaaccacaagcaggtggcggtgctggtgccgaccaccctg
ctggctcagcagcacttcgacaatttccgcgaccgtttcgccaactggccggtgcgtatt
gaaatgctgtcccgcttccgtagccagaaagaacaaacccaggtgctggagcagacgctg
gaaggcaaggtggatattttgatcggcacccataaattactgcaaagcgatgtgcgctgg
cgggatttgggcttgctgatcgtcgatgaagagcaccggttcggcgtgcgccacaaagag
cggatcaaggcgatgcgcgccaacgtcgatatcctgacgctcaccgcgacgccgattccg
cgtaccctgaacatggcgatgagcggcatccgcgatctgtcgatcatcgccacgccgccg
gcacgccgtctggcggtcaaaacctttgtgcgcgagtacgatagtctggtggtgcgtgag
gctatcctgcgtgaaatcctgcgcggcgggcaggtgtactacctctacaacgacgtagaa
aacatcgagaaagccgcccaacggctgaacgagctggtgccggaagcccgtatcaccatc
ggccacggccagatgcgcgagcgcgatctggagcgggtgatgaacgatttccatcaccag
cgtttcaatgtgctggtatgcaccaccatcattgagaccggcatcgatattccgagcgcc
aataccatcatcatcgaacgcgccgaccacttcggtctggcgcagttgcatcagctgcgc
ggccgcgtcgggcgatctcaccatcaggcttacgcttacctgcttacgccgaatcccaag
gcgatgagcagcgacgcccacaaacggctggaagccatcgcctcgctggaagatctgggg
gcgggtttcgccctcgccacccacgatttggaaattcgcggcgcgggcgaactgctcggc
gaagaccagagcggccagatggaaagcgtcggcttctcgctatacatggacctgctggaa
agtgcggtggagtcgctcaaagctggacgagagccatcgctggaggacttgatcagcagc
cagaccgacgtggaactgcgtttgccggccctgttgccggacgacttcattccggacgtc
aatacccgcttgtcgttttacaagcgtatcgccagcgccaaaaacgacaacgaactggat
gacctgaaggcggaactgatcgaccgtttcggcaaactgccggacgccgcccgccatctg
ttgcaggtagccggtttgcgtcagcaggcgcaaatactgggcatcaagcgtatcgaaggt
aacgacaagggcggttttgtcgaattcagccagcataatcgcgtcgatcccacccatctg
atcggcctgctgcagcgcgacccaaaagtttatcgtctggatggccccagccggttgaaa
ttcatcaaggatctgaatggatatccgcaacggctgacgtttatcaccaccctgttggag
gagatggcacagcatacgtgtgccgcctga
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