Dyadobacter fanqingshengii: NFI81_01560
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Entry
NFI81_01560 CDS
T08895
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dfq
Dyadobacter fanqingshengii
Pathway
dfq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dfq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFI81_01560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfq03019
]
NFI81_01560
03009 Ribosome biogenesis [BR:
dfq03009
]
NFI81_01560
Enzymes [BR:
dfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NFI81_01560
Messenger RNA biogenesis [BR:
dfq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NFI81_01560
Ribosome biogenesis [BR:
dfq03009
]
Prokaryotic type
rRNA helicases
NFI81_01560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
USJ36465
LinkDB
All DBs
Position
complement(391870..393648)
Genome browser
AA seq
592 aa
AA seq
DB search
MTTENFETFEELGLSENILKALTEMGFTKPSPIQAQGIPAVMQGSDVIGQAQTGTGKTAA
FGIPVLERIDVSSNAVQALVLCPTRELAVQVSEEIGRLAKYIKGLRIEAIYGGDSIDRQI
RSLKKGVHIVVGTPGRVMDHMERKTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPS
DRQTILFSATMSKPIMSITKRFQTDPILIKVVRNELTNVNIEQVYFEVKPQAKVEVMTRL
IDMHHLKSLLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTIL
VATDVAARGIDVSGLDGVINFDIPLDEEYYVHRIGRTGRAGLSGKAFSLVARDEKYRLKT
IEGFTKVKIEKGVIPSYEDIVGVRKARFVESISASIKEGDDQELFGDVLEMLQHAGYSTE
QVVGAMAKQIMGVQKNEYADSNLAWEERRGERDGRREGGSDRFERRPSTGGSRFGDRRES
APRGNDRYAPAARGESRPRFEGTRDESKRSATPEAGMTRLFLSLGRKDHILPKDIVGAIA
GEANIPGKTIGAIDIYDKFTFVDVPERDARAVLRAMDGNTIKGKPVQIDIAK
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgactactgaaaatttcgaaacttttgaagagcttggtctctcagaaaacattcttaaa
gcccttactgaaatgggttttactaaaccctcacccattcaagcacaaggaattccggcc
gtaatgcagggatccgacgtgattggacaagcccaaacgggaactggtaaaacagccgcc
tttggtatccctgtactagaaagaattgacgtatccagcaatgctgttcaggcattggtg
ctttgccctacccgcgaattggcggtgcaggtttcagaagaaattggccgtttggctaaa
tatattaaaggccttagaattgaagcaatctacggtggtgattctatcgaccgtcagatc
cgctcgcttaaaaaaggcgttcatattgttgtaggaacgcctggtcgtgtaatggaccat
atggaacgcaaaacgttgaaatttgacgaggtgcgcatgatggtgcttgacgaggcagat
gaaatgcttgatatgggtttccgcgaggacatcgaaagcattttggcagatatgccctct
gaccgtcagacgatcctgttctcggcaacaatgtcgaaaccaattatgtccattacaaaa
cgtttccagactgatcctattctgatcaaagtggttcgtaatgaattgactaatgttaac
attgagcaagtttattttgaagtgaagccacaagcgaaggttgaagtaatgacgcgcttg
attgatatgcatcatttgaaatcgctgcttgttttttgtaataccaaaagaaaagtagac
gaaatcgttgaagatcttcaattgagaggttatgcttcggaaggaattcacggcgatttg
cgccagcagcagcgtagcaatgtaatgagcaagttcaaggcgggtgtaacaaccattctt
gtggctaccgacgttgcagcacgtggaattgacgtaagcggactggatggcgtgatcaac
ttcgatatccctttggacgaagaatattacgtacaccgtatcggccgtacaggtcgtgcc
ggtttgtccggaaaagcattctcactggttgcccgtgatgaaaaatatcgtttgaaaacc
attgaaggttttaccaaagtaaaaattgaaaaaggagtaattccttcttacgaagatatc
gtaggtgtgcgtaaggcacgtttcgttgaaagcatttctgcatctatcaaagaaggcgac
gatcaggagcttttcggcgatgtgcttgaaatgttgcagcacgcaggttactctacggag
caagttgtaggcgcaatggcgaagcaaatcatgggcgttcagaaaaacgaatatgcggat
tctaacctggcatgggaagaaagacgcggcgaacgtgacggacgcagggaaggcggaagt
gacaggttcgaacgtcgtccatcgaccggtggaagccgttttggagatcgcagagaaagc
gcaccacgcggaaacgatcgttatgcaccagctgcacgcggcgagtcacgtccgagattt
gaaggcacccgcgacgagtctaaacgttcggcaacgccggaagctggcatgacccgctta
ttcctaagccttggccgtaaagatcatattttgccaaaagatatcgttggagccattgct
ggcgaagcgaacattccgggcaaaacgatcggagccattgatatttatgacaaattcaca
tttgtagatgttcctgagcgtgacgcccgtgcggttttgcgtgctatggacggcaacacc
attaaaggtaagcctgtacaaattgatatcgctaaataa
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