Dyadobacter fanqingshengii: NFI81_06305
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Entry
NFI81_06305 CDS
T08895
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dfq
Dyadobacter fanqingshengii
Pathway
dfq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NFI81_06305 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfq03400
]
NFI81_06305 (ligD)
Enzymes [BR:
dfq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NFI81_06305 (ligD)
DNA repair and recombination proteins [BR:
dfq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NFI81_06305 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
Spt20_SEP
Motif
Other DBs
NCBI-ProteinID:
USJ37388
LinkDB
All DBs
Position
1586405..1589167
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AA seq
920 aa
AA seq
DB search
MSLTKYNEKRSFEKTPEPKGGKADSEELIFVIQKHHASRLHYDFRLEMDGVLKSWAVPKG
PSLDPATKRLAMMVEDHPYDYKDFEGIIPKGNYGAGTVMVWDEGTYEPLEEAKTKKEKEK
ILLKELASGSVKIRMKGKKLKGEFALVKTKGMSENSWLLIKHRDKFASETDITKQDKSVI
SNKTLDAIKATTDNVWGESESDEKTGDKAKKTKDKKDEEAPIDEYIEKEKDDKSGEKDAA
TLLKKGKKAKFPEDIVPMLATLVDEPFDDPGWEYEVKWDGYRALAYMNKGVTELKSRNKK
SFNDKFYPIHEGLCDWKINAVLDGEVVVINDKGHSDFGALQNWRSEADGELVYYVFDILW
YEGKSLVDLPLTERKAILQSIVTEDSPVRIGYSIAAEGTAFFNAAGEMGLEGIIAKRSDS
AYQVGLRTNDWLKIKIHNRQEVIIAGYTRNAGTSKHFSALLLAAYDQGVLQYVGKVGTGF
KDKQQKEMLELFKPLETENSPFKETPDYNKPSRFRPNPPKANATWLKPELVCEVSFTEVT
SDGVFRHPSFEGMREDKKARDVVREIEQPTEKAVEEDKKSEKEDKKAQKEEKKSEKKEII
AKPDKSKRKTLLNPTDETQVRKINGNEVKFSNLSKIFWHHEKITKRDVINYYYQVAPFIL
PYLERRPLSLNRFPNGIDGKSFYQKDVTGKVPSWVEMFPYTANDEEQQKNFMVCNDEAAL
LYMANLGCIDMNPWNSRTHKPDNPDWCLLDLDPDTTNTFEQVIETALAIKQLLDSLNIDG
YCKTSGSTGLHIYIPLGAKYSYDQCQLFAQWIASQVQQELPGFTSIERMTKNRKGKLYID
YLQNRPKATLAAPYSIRPKPGATVSMPLHWEEVKIGLQLRDFTILNAMDRLQQEGDLFKP
VLGKGIDLEAAIGKIEAEAK
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgaccaaatacaacgagaaacgttcctttgagaaaacacctgaaccaaagggt
ggaaaagccgattcggaagaactcatttttgtgatccaaaaacatcatgcttcgcggctg
cattacgatttcaggctggaaatggatggtgttttgaaaagctgggccgttcctaaaggc
ccttccctggatccggctacgaagcggctggctatgatggtggaagaccatccttacgat
tacaaggacttcgaaggaataataccaaaaggcaattatggtgctggaaccgtaatggtc
tgggatgaagggacatacgaaccattggaagaagccaaaaccaaaaaggaaaaggagaaa
atattactgaaagaactggcatccggctctgtaaagatccgcatgaaaggcaaaaagcta
aaaggtgaatttgctttggtcaaaacaaaaggtatgtcagaaaactcctggctgctcatt
aagcaccgggataaatttgcatccgaaacggatattacaaaacaagataaatcggtgatt
tccaataagacattggatgctataaaagcaaccactgataatgtttggggggaatcagaa
agtgatgaaaagacaggtgataaagccaaaaagacgaaggacaaaaaggatgaggaagcc
cctattgatgaatacattgaaaaggaaaaagacgataaatccggtgaaaaggacgctgca
acgctcttgaaaaagggtaaaaaggcgaaatttcctgaggacatcgtgcccatgctcgct
acgctagtcgacgaaccatttgatgatccgggctgggaatatgaggtcaaatgggacggt
taccgggcattggcttacatgaataaaggcgttaccgagcttaaatcgcggaataagaag
tcatttaatgataagttttatcccattcacgaaggcctgtgtgactggaagatcaatgcg
gtgctggacggggaagttgttgtcatcaatgataaaggccattctgatttcggggctttg
caaaactggcgcagcgaggcagacggtgagctggtctattatgtatttgatatattgtgg
tatgaaggcaaaagtcttgtagatctgcctttaaccgagcgaaaagctattttgcaaagc
atagtgactgaggatagtcccgtcaggattggttacagtattgcggctgagggaactgcc
ttttttaatgcggccggggaaatgggactggaagggatcattgccaaaagatccgatagc
gcctatcaggtcggtttgcgcacgaacgattggctgaaaattaaaatacacaaccggcag
gaagtcatcatagcaggttacacacgcaatgcgggcacgtccaagcattttagtgcgctg
ttactggctgcttacgaccagggcgtgctgcaatatgtaggcaaagtcggcacgggcttc
aaggacaaacagcaaaaagaaatgctggaactgtttaagccattggaaacagaaaatagt
ccattcaaagaaacacccgattacaacaagccatcccgtttccggcccaatccgccgaaa
gccaatgcaacctggctcaaaccggagctggtttgcgaagtgagcttcacagaagtgact
tcggacggcgttttccgtcacccgtcgtttgagggaatgcgtgaggataaaaaagccagg
gacgttgtgcgcgaaatcgagcagccgacggaaaaagctgttgaagaggacaaaaagtca
gagaaggaagataagaaagcgcaaaaagaagaaaaaaagtcggaaaagaaagagatcatc
gcgaaaccagacaagtcgaaacgcaagacattgcttaacccgacggatgaaacgcaggtc
agaaaaatcaatggtaatgaggtcaaattttcaaatctgagtaagattttctggcatcat
gaaaaaattacgaagcgcgatgtcatcaattattactatcaggtcgccccgttcattttg
ccatatctggaacgcaggccattgtcattaaaccgcttccccaatggcattgatggaaag
agtttttaccaaaaagacgtcaccggcaaggtgccgtcgtgggttgaaatgtttccctac
actgcaaatgatgaagaacagcagaaaaactttatggtttgcaatgatgaagcggcattg
ttatatatggccaatctgggctgcattgacatgaatccctggaacagccgtacccataaa
ccggataaccccgactggtgcctgctcgatctggacccggacacgaccaacactttcgag
caggtgatcgagacggcgctggctattaaacaattactggactcgctgaatattgacggt
tactgcaagacatccggctccacaggcctgcacatttacatcccgctgggcgcaaaatat
tcttacgatcaatgtcagctttttgcccaatggatcgccagccaggtgcaacaggaattg
cccggcttcaccagcattgagcgcatgaccaaaaaccgcaaaggaaaactatacattgat
tacctgcaaaatcgcccgaaagcaacattagcggctccctactccatcagaccgaaaccg
ggcgcgactgtttcaatgccattgcattgggaagaagttaaaataggcttgcagttgcgg
gactttactattttaaatgcgatggaccggttgcagcaggaaggcgatctgtttaaaccc
gtgctcggaaaaggcatcgacctggaagcagccattggaaaaatcgaagcggaagccaaa
tga
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