Dermatophagoides farinae (American house dust mite): 124493548
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Entry
124493548 CDS
T08043
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dfr
Dermatophagoides farinae (American house dust mite)
Pathway
dfr03013
Nucleocytoplasmic transport
dfr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dfr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124493548
03015 mRNA surveillance pathway
124493548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dfr03019
]
124493548
Enzymes [BR:
dfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124493548
5.6.2.5 RNA 5'-3' helicase
124493548
Messenger RNA biogenesis [BR:
dfr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124493548
mRNA cycle factors
Common to processing body (P body) and stress granule
124493548
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
nSTAND3
SLFN-g3_helicase
ATPase
Helicase_RecD
SRP54
AAA_16
DEAD
Adeno_E1A
Folate_carrier
PhoH
AAA_22
Motif
Other DBs
NCBI-GeneID:
124493548
NCBI-ProteinID:
XP_046912597
LinkDB
All DBs
Position
Unknown
AA seq
1192 aa
AA seq
DB search
MSQFLDDRDNDLMLLNTQCSNFDYGEYSQRLNSSSSQQQSYNHHDVFQDQAGNSSPNNSV
AADSIITSDITGITQNFSELNFEDEDDENAIVNDYNKELPGHACKYCCIHDPNTVVQCNI
CKKWFCNGRGNTSGSHIINHLVRSKHKEVSLHKDGTLGDTVLECYSCGCRNVFVLGFIPA
KADSVVVLLCRQPCAAQSSLKDMNWDPDQWKPLISERMFLSWLVKVPSDEEQLRARQITA
QQINKLEELWKEGSSDATFLDLEKPGVDEEPQQVLVSYEDAYQYQSIFSPLVKLEAEYDK
KLKESQTQDNIEVRWDVGLNMKIIAYFRIAKSDTDMRLMHGDELKLRYVGGDPTKLWSGI
GHVTKIPDNYSDEVAIELKTNHGVPTNFNSNFAVDFVWKSTSFDRMQAALRRFTIDDTSV
NSSIYHKLLGHNVEDKQVAKLSGIKLHIPPNLPELNKSQMFAVKQSASKSLTLIQGPPGT
GKTVTSASIVYHFVRSGSTPVLVCAPSNIAVDQLTEKIHLTGLKVVRICAKSREAISSPV
SFLALHNQIREMVGHSEFRKLQQLKDETGELSSSDEKRYRILKRQCERELLESADVICCT
CVGAGDPRLTRFKFHSMLIDESMQATEPECMVPVVLGVRQLVLVGDHCQLGPVVMCKKAA
KAGLSRSLFERLVVLGIRPIRLEVQYRMHPSLSEFPSNLFYEGSLQNGVHGSERQLKGND
FPWPIPDRPMFFYCCQGQEEIAGSGTSYLNRTEAAYVEKIITRFLKSGLKPEQLGVITPY
EGQRSFLVQYMQHNGSFHTKLYQEIEVASVDAFQGREKDIIVFSCVRSNEHQGIGFLNDP
RRLNVALTRARYGIIIVGNPKVLSKQPIWNHLLSFYKEQRVLVEGPLNNLKESLIQFSKA
RKMFVNPITNGLSPFNSVAQPMNNSSNNNNNLPFQMTMPFGMNNRFGGPQSGLLSNPITT
GGGGGGTNNNSDNDYSLYSSNSQTNSQPYSHHQNHNNHLHHHYGGGGRHNQHDQLSYIAN
DRAQTNLAAISNFPVPIGLFITMPQANYYGQNQQQQQQQMAHNQRSNNNNNKQQNKRYNR
NSGTISRSSQDSQNLSQNLLTQPGTFGQLSSNSQTHHPGAGGLYSMQGYSQNILSQTDLS
QDPYSFEDRSQLDGLLSQESAYHDRSHLYLSSQTANTGAGNSGGGGGGTQPN
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaatttcttgatgatcgagacaatgatctaatgttgttgaatactcaatgtagt
aattttgattatggcgaatattcacaacgacttaattcatcatcatcacaacaacaatca
tacaatcatcatgatgtttttcaggatcaagccggtaattcatcaccaaacaatagtgta
gccgctgattcgataataacatcggatataacgggtataacacagaattttagtgaatta
aatttcgaagatgaagacgatgaaaatgctatcgttaatgattataataaagaattgcct
ggacatgcttgtaaatattgttgtatacatgatccaaatactgttgtacaatgtaatatt
tgtaaaaaatggttctgtaatggtcgtggtaatacatcgggtagtcatattattaatcat
ttagtaagatcgaaacataaagaagttagcctacataaagatggtacacttggtgatact
gtacttgaatgttatagctgtggttgtcgtaatgtttttgtattgggttttataccggct
aaagctgattcggttgtcgttttgctttgtcgacaaccatgtgctgcacaatcaagcctt
aaagatatgaattgggatcccgatcaatggaaaccattaatatcggaacgaatgtttctc
tcatggttagtgaaagttccatcagatgaagaacagctgagagctagacaaatcacagca
caacagattaataaattggaagaactttggaaagaaggtagttctgatgcgacatttttg
gatctcgagaaaccgggtgtcgatgaagaaccacaacaagtattggtcagttatgaggat
gcctatcaatatcaaagtatattttcaccattggttaaacttgaagcagaatatgataaa
aaattgaaagaatcacaaacccaagataatattgaagtacgatgggatgttggtctcaat
atgaaaatcattgcctattttcgtattgctaaatccgatacggatatgcgtttaatgcat
ggtgatgagcttaaacttcgttatgttggtggtgatccaacaaaactatggtccggtatt
ggccatgtaacgaaaattccagataattatagtgatgaagtggccattgaattgaaaacg
aatcatggcgtaccaacaaatttcaattcaaattttgctgtcgattttgtttggaaatca
actagtttcgatagaatgcaagctgctttacgtagatttaccattgatgatacatcggtg
aatagtagtatttatcataaattacttggtcataatgttgaagataaacaggtagcaaaa
ttatcgggcataaaattacatataccaccgaatctacctgaattgaataaatcacaaatg
tttgccgtgaaacaatcggcatcgaaaagtttaacattgattcaaggaccgccaggaacg
ggtaaaacagtgacatctgcatcgattgtatatcattttgtacgatccggttcaacgcct
gtattggtatgtgcaccaagtaatattgctgtcgatcaattgacggaaaaaattcattta
accggattgaaagttgtgcgaatatgtgcaaaaagtcgtgaagcaatcagttcacctgta
tcatttcttgcattgcataatcaaattcgtgaaatggttggacattctgaatttcgtaaa
ctacaacaattgaaagatgaaactggtgaattatcttcatctgatgaaaaacgatatcga
atattgaaacgacaatgtgaacgtgaattgctggaatctgccgatgttatttgctgtaca
tgtgttggtgccggtgatccacgattgactcgatttaaatttcattcgatgcttattgat
gaatcgatgcaagcaaccgaaccggaatgtatggtaccagtagttcttggcgtacgacaa
ctagtacttgttggtgatcattgtcaacttggtcctgttgttatgtgtaaaaaagcagca
aaagctggactttcacgatcattatttgaacgtttagttgtacttggtatacgtcccata
cgtttagaagtccaatatcgtatgcatccttcgcttagtgaatttccatcgaatctattc
tatgaaggatcattacaaaatggtgtacatggatcagaacgacaattgaaaggaaatgat
tttccatggccaataccggatcgaccaatgtttttctattgttgtcaaggtcaagaagag
attgctggttccggtacatcatatctgaatcgaacagaagctgcatatgttgaaaagatt
ataaccagatttttgaaatctggccttaaacctgaacaattaggtgtaatcacaccatat
gaaggacaacgatcatttcttgtacaatatatgcaacataatggatcatttcatacgaaa
ttatatcaagaaattgaagtggcaagtgttgatgcatttcaaggacgtgaaaaagatata
atcgttttctcatgtgttcgttcaaatgaacaccaaggtattggatttttgaatgatcca
cgacgattaaacgtcgcattgactcgtgctcgttatggaatcataattgttggtaatcca
aaagtattgtctaaacaacctatatggaatcatctactatcattttataaagaacaacgc
gtattagtggaaggtccattgaataatctcaaggaaagtttgattcaattttccaaagcc
cgtaaaatgtttgtcaatcctatcaccaatggtttatcaccatttaattcggttgcacaa
ccaatgaataacagcagcaataataataataatttaccatttcaaatgacaatgccattc
ggaatgaataatcgttttggtggaccacaatctggattattatcaaatccaattactact
ggtggtggtggtggtggaaccaacaacaacagcgacaatgattattcactgtattcatca
aacagccaaacaaattcacagccatatagtcatcatcaaaatcataataatcatcttcat
catcattatggtggtggtggtcgacataatcagcatgatcaattatcatatattgctaat
gatcgtgcccagactaatttggctgcaatatcaaattttcctgtacctattggtctattc
ataacgatgccacaggctaattattacgggcaaaatcaacaacaacaacaacaacaaatg
gctcataaccaaagatcgaataataataataataaacaacagaataaacgatataatcgt
aatagtggtacgattagtcgtagtagtcaagatagtcaaaatttatcacaaaatttgctc
acacaacctggtacatttggtcaactatcatcgaatagtcaaacacatcatccaggtgcc
ggcggtttatattcaatgcaaggatattcacaaaatattctctcacaaacagatttatca
caggatccatatagttttgaagatcgatctcaattagatggccttttatcacaggaatca
gcttatcatgaccgaagtcatctttatctatcctcacaaacggccaataccggtgctgga
aacagtggtggtggtggtggtggtacacagcccaattaa
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integrated database retrieval system
