Dolichospermum flos-aquae: HGD76_16825
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Entry
HGD76_16825 CDS
T06652
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dfs
Dolichospermum flos-aquae
Pathway
dfs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HGD76_16825 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dfs03400
]
HGD76_16825 (mfd)
Enzymes [BR:
dfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HGD76_16825 (mfd)
DNA repair and recombination proteins [BR:
dfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HGD76_16825 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QJB45587
UniProt:
A0A6H2C246
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All DBs
Position
3481550..3485065
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AA seq
1171 aa
AA seq
DB search
MAFSSIVRALARSPLTAELITKLNKQRELRLNGISRLPKGLVASALANYEDQDLCVVCAT
LEEAGRVFAQMEAMGWKTVHFYPTSEASPYEPFDPENELSWGQMQVLADLVNGQLQKQKT
AIIATVGALQPHLPPPEAFKSFCVTLEKGMEFDLDGFGEKITLLGYERVPLVETEGQWSR
RGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPATQRSALDKVEKITLTPTSFAPIISDA
LKDLPNVETFQGISSELGTLEGSRRFLGLAFAKPASLLDYLSENTLVAIDELEQCYAHSD
RWVENANSQWSVGAKHLEDHFLQPPIIYLPNASPVQLSVALPKIHRNFDECIAEIGNFRK
LYLSELSEENSGLNLASRPLPVTPHQFAKLGETIRKERERNFAVWILSAQPSRSVSLLQE
HDCPAQFIPNPRDYQAIDKLQINHIPIALKYSGLAELEGCILPSYRLVIVTDREFYGQHS
LANFGYVRKRRQATSKQVDPNKLRQGDYVVHRSHGIGKFVKLESLTINDETRDYLVVQYA
DGLLRVAADQVGSLSRFRTGGDQAPELHKMSGKAWENTKSKVRKAIKKLAVDLLKLYAAR
SQQQGFSYPHDMPWQEEMEDSFPYQPTTDQLKAVQDVKRDMESERPMDRLVCGDVGFGKT
EVAIRAIFKAVTAGKQVALLAPTTILTQQHYHTIKERFAPYPINVGLLNRFRSAEEKRNI
QKRLATGELDIVVGTHQLLGKSVQFKDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLS
ATPIPRTLYMSLSGIREMSLITTPPPTRRPIQTHLSPLNSDVIRSAIRQELDRGGQVFYV
VPRVDGIEETTTKLREMVPGGRFAIAHGQMDESELESTMLTFGNNDADILVCTTIIESGL
DIPRVNTILIEDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRELSDAARQRLRAIQE
FTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMDVIGFDLYMEMLEEAIREIRGQEIPKVE
DTQIDLNLTAFIPATYITDLDQKMSAYRAVATVKSKYELKQIAAEWTDRYGTIPVSANQL
LRVMELKQLAKNLGFSRIKPENKQHIVLETPMEEPAWNLLAENLTPTMKARFVYSPGKVT
ARGLGVFKADQQLQTLIDTFVKMQGAISETP
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggccttttcttctattgtgcgtgctttggcgcgatcgcctcttaccgccgaactaatt
accaaactcaacaaacaacgggaattgcggttaaatgggatttctcggctacctaaggga
ctggtagcttcagcattagcaaactatgaagatcaggatttgtgcgtcgtctgtgccacc
ctagaggaagctggccgggttttcgcccaaatggaagcaatgggctggaaaactgtgcat
ttttacccaacttctgaagcttctccctatgaaccttttgaccctgaaaatgagttaagt
tggggtcaaatgcaggttttagcggatttggtaaatggtcagttgcaaaagcaaaaaact
gccataattgccactgtgggggcattacaaccacatttgccacctccggaagcgtttaaa
tcattttgtgtaaccttagaaaaagggatggaatttgatttagatgggtttggggaaaaa
atcactcttttgggatatgaacgagttcctctggtggaaactgagggacaatggagtaga
cggggggatattgtggatgtgtttccggtgtcctcagagttgcctgtgcgcttggaatgg
tttggcgacgaaattgaacaaattcgagaatttgaccccgctacccaacgttctgctttg
gataaggtggaaaaaattactctcaccccgacaagttttgcacctattatttcagatgca
ctgaaagatttaccaaatgtagagacgttccagggaatttcttcagagttaggaacatta
gaaggaagtcggcggtttttggggttggcttttgcaaaacccgcttcattattagattat
ttatctgaaaatactcttgttgccattgatgaactagaacaatgttatgctcatagcgat
cgctgggtggaaaatgctaatagtcagtggtcagtaggggcgaaacatttagaagaccat
tttttgcaaccaccgataatttatcttccaaatgcttcgccggtacagttgtcagttgca
ttaccgaaaattcatcgaaattttgatgagtgtatagcggaaattggcaattttagaaag
ttatatttatcggaattatcagaagaaaatagtggactgaatttagctagtagaccttta
cctgttacacctcatcaatttgcaaaattaggggaaacaattagaaaagaacgcgaacgc
aattttgcagtttggatactttcggctcaaccttcccgttctgtttctcttctgcaagaa
catgattgtcccgcgcagtttattcccaatcctcgtgattatcaagctattgataaactg
caaattaatcatattccaattgcccttaaatattccggtttagcagaattagaaggttgt
attttaccttcttatcggttggttattgtcaccgatagagaattttatggacaacattcc
ttagctaattttggctatgtccgcaaacgtcgtcaagcgacatctaaacaagttgatcct
aacaaattacgtcagggagattatgtagttcatcgtagtcatggaattggtaaatttgtc
aaattagaaagtctgacaattaatgatgaaacccgtgattatttagttgttcaatatgca
gatggtttgttaagagttgcggctgaccaagttggttctttatctcgtttccgcactggt
ggagatcaagccccagaattacataaaatgagcggaaaagcttgggaaaatacgaagagt
aaagttcgcaaagccattaagaaattagcggtagatttattaaaattgtatgcagcccgt
tctcaacaacaaggtttttcctatcctcatgatatgccttggcaagaagaaatggaagat
tcttttccttaccaacctaccacagatcaactcaaagcggtacaagatgtgaaacgggat
atggaaagtgaaagaccgatggataggttagtatgtggagatgtgggttttgggaaaaca
gaagtagcaattcgggcgatttttaaagctgttaccgcaggaaagcaagttgcactttta
gccccaacaacaattttaactcaacaacattatcacacaattaaagaacgttttgcccct
tatcctataaatgtgggtttactgaatcggtttcgcagtgcggaagaaaaacggaatatt
caaaaacgactggctacgggagaattagatatagttgtggggacgcatcaattattaggt
aaaagtgtccaatttaaagatctaggacttttagtaattgacgaagaacaaagatttgga
gttaatcaaaaggaaaaaatcaaaagcttaaaaactcaagttgatgttttaactctttct
gcaactcccattcccagaaccttatatatgtcattgtcgggaattcgggaaatgagttta
attaccacaccacctcccaccagaagaccaattcaaacccatctttcaccgctcaactcc
gatgttattagaagtgcaattcgacaagaattagatcgaggtggacaagtattttatgta
gttccccgagtagacggaattgaagaaaccacgacaaaattgcgagaaatggttcctgga
ggcagatttgcgatcgctcatggtcaaatggacgaaagcgagttagaatcaactatgctg
acttttggcaataatgacgctgatattcttgtttgtaccacaattattgaatctggttta
gatattccgcgagtcaacacaatattaattgaagatgctcaccgttttggtttatctcaa
ttatatcaattgcgaggacgagtcggacgggcaggaattcaagcccacgcatggttattt
taccccaaacaaagagaattatccgatgcagccagacaaagattaagagcaattcaagaa
tttactcaactcggttctggatatcaattagcaatgcgggatatggaaattcgcggtgtg
ggaaatttgctaggtgcagaacaatctggtcaaatggatgtgattggctttgatttgtac
atggaaatgttagaagaagcaattcgagaaattagaggtcaagaaatacccaaagttgaa
gatactcaaattgaccttaatctcaccgcatttattcctgcaacctacattactgacctt
gatcaaaaaatgagtgcttatcgggctgtagccacggtaaaatcaaaatatgaattaaaa
caaattgctgctgaatggactgatagatatggaactatcccagtttcggcaaatcaatta
ttacgagttatggaattaaaacaattagccaaaaacctgggatttagccgcattaaacca
gagaataaacagcacattgttttagaaacaccaatggaagaacctgcttggaatctatta
gcagaaaacctcactcccaccatgaaagcaaggtttgtttattctcctgggaaggtaaca
gcgagaggtttaggagtgtttaaagcagaccaacaattgcaaactttaatagatactttt
gtaaaaatgcaaggtgcaatttcggaaactccttaa
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