Megalodesulfovibrio gigas: DGI_1666
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Entry
DGI_1666 CDS
T02851
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dgg
Megalodesulfovibrio gigas
Pathway
dgg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dgg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DGI_1666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dgg03400
]
DGI_1666
Enzymes [BR:
dgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DGI_1666
DNA repair and recombination proteins [BR:
dgg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DGI_1666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_16
AAA_22
Flavi_DEAD
AAA_5
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGW13489
UniProt:
T2GBD7
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All DBs
Position
1787838..1791377
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AA seq
1179 aa
AA seq
DB search
MTSPYDIPATAIDRLVRALSGKGRTEAALYKTGPGTRALLAHELLLAGARPVLVVRGAAE
LHEMLGVLQLFQSQEEFQRQKARWVVLPPFLLGGGREQAAQRTLRKDAWARRIAALWALQ
THEGRVGVICTVDNFLPWWPPRNFLDTNHLVIKSGEELPSDLIIEQAITWGYERSTLVSR
PGELSRRGDILDIFTPGHEHALRLEFFGDTVEEMRLFDPVTQRSHAMLKEAVLLPVRPLA
VTAQARQEALARFKALRTTKRIDPEEEKALRLALEEGGAGLTPGVFYETPAVFEDWLPGD
RTCLQASPELFAAVLEEQAWAWEKRAEEGAMSVLLARRRALHLRSTEQALKGLQAGRTLL
FQSLVMGLEREGDEAPEHSIDSFEQLMRLDREEQPQDEDTQRLEEQRLRDRPWQALVERL
KIWSRSRRQTLLCFSSEQGRKKFLALAAQDGIIPATSYATTAQGLFALLSPFAKGADLQW
NGMRILGEDVLQPRGAVRPAVSRKEFIGLRQYEELTPGDLLVHRDYGLGRFQGLVRLDLG
GVGNDFLLMHYAGDDKLYLPVDRLGLVQRFKGPEEIEPALDKLGGIGWARTREKARKAVE
QIAGELVEMYAWRKVAKGFTYGPENELFREFEASFGFEETPDQAQAIQDVLDDMARPEPM
DRLVCGDVGFGKTEVAMRAAVRAALESRQTAILCPTTVLAEQHFQNFKARLKDLPITVAM
LSRFVTARQQRAILEQVKRGQVDILIGTHRLLSRDIQIPNLSLLVLDEEQRFGVKHKERL
KEFKKNVDALTLTATPIPRTLQLSLSGIRSLSIIETPPRERKAVESALIEREPKLLKRIL
EQELAREGQVFWVYNRVQGLEQVVDFVKQLVPGARVAMAHGQMAEKQLEETMHAFWHGEL
DILVCTSIVESGLDFPRANTMVVDQAQLFGLGQLYQLRGRVGRSDRQAYTYFVTPSIDQL
AEKTRKRLQIIMDMDYLGAGFQVAMEDLRLRGAGNILGESQSGHIAKVGLDLFLEMLEME
VSRLRGTAREEVVEPELQIGFAAHIPEHYMPDSRERLKYYKGFTSIHSPEVRQELQAEVR
DRFGPLPEELSNFLAVLDFKRQLAQLGVHKADLFPGKVKLSWGESSRALDPARLVAWVAG
QAGRARLMPPSTLELRLDENVDMVQRLQQVGDAIFSLKA
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgacatcgccgtacgatatccccgccactgccattgaccgcctggtgcgcgcgctttcc
ggcaaggggcgcaccgaggccgccttgtacaagactgggccgggcacccgggccctgctg
gctcatgaactgctgctggctggcgcccggccggtgctggtggtgcgcggtgcggccgag
ctgcacgagatgctgggggtgctgcagctcttccagagccaggaggagttccagcgccag
aaggcccgctgggtggtgctgccgccgtttctgctgggcggcggtcgggagcaggccgcc
caacgcaccctgcgcaaggacgcctgggcccggcgcattgccgccttgtgggccctgcag
acccacgagggccgagtgggggtgatctgtacggtggacaacttcctgccctggtggccg
ccgcgcaattttctggacaccaatcatctggtcatcaaatccggggaagaattgccctcg
gatctgatcatcgagcaggccattacctggggctacgagcggtccacgctggtctcgcgg
ccaggggagctttcccgccgcggcgacatcctggacatcttcacccccgggcacgagcat
gccctgcgcctggagtttttcggggacacggtggaggagatgcggctgttcgatcccgtc
acccaacggtcgcatgccatgctcaaggaggcggtgctgctgcccgtgcggccgctggcg
gtgacggcccaggcccggcaggaggcgctggcgcgcttcaaggcgctgcgcacgaccaaa
cgcattgatccggaagaggaaaaggccctgcgcctggcattggaagagggtggcgccggc
cttacccccggggtgttctacgaaacgccggccgtgttcgaggactggctccccggggac
cgcacctgcctgcaggcctcgccggagctgtttgccgccgtgctggaagagcaggcctgg
gcctgggaaaaacgcgccgaagagggcgccatgtccgtgctgctggccagacgccgcgcc
ctgcacctgcgctccacggaacaggccctcaaagggctgcaggccggacgcaccctgctg
tttcagtccctggtcatggggctggagcgagagggggacgaagcgcccgagcacagcatc
gacagctttgagcagctcatgcggctggaccgcgaggaacagccccaggatgaagacacc
cagcggctggaggagcaacgcctgcgggacaggccctggcaggccttggtggagcggctc
aaaatctggagccgcagccggcggcagaccctgctgtgtttctcctcggagcaggggcgc
aagaaatttctggccctggccgcgcaggacggcatcatcccggcaacgtcgtatgccacc
acggcccaggggctctttgccctgctgtcgccctttgccaagggggcggatctgcagtgg
aacggcatgcgcatcctgggggaggacgtgttgcagccgcgcggcgccgtgcggcctgcc
gtctcccgcaaggaattcatcggcctcaggcagtacgaggagctgacccccggcgacctg
ctggtgcatcgcgactacggcctgggtcgcttccaggggctggtgcggctggatctgggc
ggcgtgggcaacgattttctgctcatgcattacgccggagacgacaagctctatctcccc
gtggaccggctggggctggtgcagcgctttaaggggccggaagagatcgaacctgctctg
gacaagctgggcggcatcggctgggcccgcacccgggagaaggcccgcaaggccgtggag
cagatcgccggggagctggtggagatgtatgcctggcgcaaggtggccaagggctttacc
tacggcccggaaaacgagctgttccgcgagttcgaggcgtccttcggcttcgaggagacg
ccggaccaggcccaggccatccaggacgtgctggacgacatggcccgccccgagcccatg
gatcgcctggtctgcggggacgtgggcttcggcaagaccgaggtggccatgcgcgccgcc
gtgcgcgcggccctggagagccggcagacggccatcctgtgtcccaccacggtgctggcc
gagcagcactttcagaatttcaaggcccggctcaaggatctgcccatcaccgtggccatg
ctctcgcgctttgtcacggcccggcagcagcgggccatcctggagcaggtcaaacgcggg
caggtggatatcctcatcggcacgcaccggctgctgtcccgggacattcagattccgaat
ctctccctgctggtgctggacgaagagcagcgctttggcgtcaagcacaaggagcggctc
aaggaattcaagaagaacgtggacgccctcaccctcacggccacgcccattccgcgcacg
ctgcaactgtccctctcgggcatccggagcctctcgattatcgaaaccccgccccgggag
cgcaaagccgtggaaagcgccctcatcgagcgcgagcccaagctgctcaagcgtattctg
gaacaggaactcgcccgcgaggggcaggtgttctgggtgtacaaccgggtccagggcctg
gagcaggtggtggatttcgtcaaacagctggtgcctggggcgcgggtggccatggcccac
gggcagatggccgaaaagcagctcgaagagaccatgcacgccttctggcacggcgagctg
gacatcctggtgtgcacctccatcgtggaatccgggctggactttccccgcgccaacact
atggtggtggatcaggcccagctcttcggcctggggcagctgtatcagttgcggggccgg
gtggggcgatccgaccggcaggcgtatacgtacttcgtcacaccatccattgaccaactg
gcggaaaagacccgcaaacggctgcagatcatcatggacatggactacctcggcgcgggg
ttccaggtggccatggaggacttgcggctgcgcggtgcgggcaacatccttggggagagc
cagtccgggcacattgccaaggtggggctggatctgttcctggaaatgctggagatggaa
gtctcccgtctcagaggcacggcgcgggaagaagtggtggagccggaactgcagatcggc
tttgcggcgcacattccagagcattacatgccggactcccgcgagcggcttaaatattac
aaagggttcacttccattcattcccccgaggtgcgacaggaactgcaagccgaggtgcgc
gaccggttcggccccctgcccgaggagctcagcaattttctggccgtgctggacttcaag
cgccaactggcgcagctgggcgtgcacaaggccgatctgttccccggcaaggtcaaactt
tcctggggtgaaagctccagggccttggacccggcacggcttgtggcctgggttgccggg
caggcaggccgggcgcggctcatgccgccctccacactggagttgcgccttgatgaaaac
gtggatatggtccagcgtctgcaacaggttggcgacgccatcttctccctcaaggcctga
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