Dendronephthya gigantea (soft corals): 114517522
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Entry
114517522 CDS
T06112
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
dgt
Dendronephthya gigantea (soft corals)
Pathway
dgt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
114517522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dgt03400
]
114517522
Enzymes [BR:
dgt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114517522
DNA repair and recombination proteins [BR:
dgt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
114517522
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
DNA_ligase_IV
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
114517522
NCBI-ProteinID:
XP_028393087
LinkDB
All DBs
Position
Unknown
AA seq
850 aa
AA seq
DB search
MRLLLPQFDKERPAYGMKETALARHYIEILSIGKDSLDAKKLLNYKAPTHALKDAGDFAM
VAYFVLKKRCPEKGSLTLKQVNDLLDKVAMGNVNHKKADTRSALQILLRNTSALEQKWLI
RMIMKELKVGTSEKSIFDVYHPDAMDFYNVCSTLSKVCQDLKDPTVRKNDSDITLFSAFK
PMLGQRAAIDEVEKLMGEQDFIIETKLDGERFMLHKQDNMFKYFSRGSNEYTATFGGSPN
EGFLTPFIANCFASKVKSCILDGEMMAFNASNEVKFVSKGANIDFKSEKTYSGGTGLHPC
FVVFDVLLVNSKSIASLPLKERLVTLEKVFTPVPGRIQLVSSQPGKNRQDVIKALNEAVD
KYEEGLVVKSPLSIYQPNVRNGSGWLKIKPEYVDGLTDELDVIILGGYFGSGFRGGMVSH
FLCVFAAPTSSPEEKPSKFYSFCKVGSGYSINELKELCRQLHPYWKKFDPKKPPSVIELP
SSFKEKPDVWIEPSKSKIVQIKAAEIVPSDNYRAGLTLRFPRLEKIRDDKSWYECLDMTE
LERLRTIAKGKLSYQHTSTSYEPAPKKRRAVTRVEKPMTVAKHFASADASAVEEKSKIFD
GKEFYIVNGPPGCGKVEIETKIIENGGSVVQNPGKETFCVVAHKSNVRLQNIVKQAVYDI
VYSNWLLECLESNKLLPWSPSHMMHMSPKTREKFALDYDENGDSYTRDLNVASLKEIFQK
IDEKQNMVKLTREEIVQVESRYFPNSPLGLFRQYRFYVDQYLEIGDPRTKIPNCSLDIQA
AELQYYGAQLSDEFDEDVTHVIMNPRDLSRLPRIQEVSRERSRKAHVVTASWVSESIEAG
TILKERNYGP
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttgctcctacctcagtttgacaaagagcgaccagcctatggtatgaaggagaca
gccttggctagacattacattgaaatactcagcattggaaaggatagtttagatgcaaag
aaactactcaattacaaggcaccaactcatgcattaaaggatgcaggtgactttgcaatg
gtagcatattttgttttaaagaaacgatgtcctgagaaagggagtttaaccttaaaacaa
gtgaatgaccttcttgacaaggttgctatggggaatgtgaatcataaaaaagcagataca
agaagcgcattgcaaattcttctgagaaataccagtgctttggaacagaagtggttgatc
cgaatgataatgaaggaactaaaagttgggactagcgaaaaatccattttcgatgtctac
catccagacgccatggatttttataacgtgtgtagtaccctttcaaaggtgtgtcaagat
cttaaagacccgacagtgaggaagaacgactctgacatcacattgttttctgcatttaaa
ccaatgttgggtcaacgtgcggccatagatgaggtagaaaaactgatgggcgaacaagat
tttatcatcgaaacgaaactggatggagagagatttatgttacacaaacaagacaatatg
ttcaaatacttttcacgaggttcgaacgagtatacagcgacgtttggtggttccccaaat
gaaggattcctcacgccatttattgcaaactgcttcgccagcaaggtaaaatcgtgcata
ctggatggtgaaatgatggctttcaatgcttcaaatgaagtgaaatttgtctcaaaagga
gccaatattgattttaagagtgaaaagacctactctggaggtacaggtcttcatccatgt
ttcgtggtattcgatgtcctcttggtaaacagcaaaagtattgcaagtttaccactgaaa
gagcgattggtaactttggaaaaagtattcacacccgttcctggacgaattcaactggtt
tcaagtcaaccagggaaaaacaggcaagatgtgataaaggcgttgaacgaagccgtggat
aaatacgaagaaggattagtcgtaaaatcgccgttgtcaatttatcaaccaaatgttaga
aacggaagtggttggctgaagataaaacctgaatatgttgatggattaacagacgagttg
gacgtcataatccttggaggttacttcggaagtgggttcagaggtgggatggtttcgcat
ttcttatgtgtttttgctgctccaacctcatccccagaagaaaaacctagcaagttctac
tcattttgcaaggttggctcaggatattctataaatgaactgaaagaactatgtcgtcaa
ctgcatccatattggaaaaaatttgacccaaaaaagcctccatcagtcattgagctacca
tctagtttcaaggagaaacctgatgtctggattgaaccttcaaaatcgaagatcgttcag
atcaaggcagcagagattgttccctcggacaactacagggccggtctgacgttgcgattt
ccaagacttgaaaaaattcgtgacgacaaaagttggtacgagtgtctcgacatgactgaa
ctcgagagattacgaacgatcgcgaagggaaagctctcgtatcagcacacgtcgacaagt
tacgagcctgcgccgaagaaaagacgtgcggttacgcgcgtggagaaaccgatgaccgtt
gctaagcatttcgctagcgctgatgcttctgccgtagaagagaaatcaaagatttttgat
gggaaagagttttacatcgtgaatggtccgcccggctgtggcaaagttgaaattgagaca
aaaataatagagaatggaggatctgttgttcaaaaccctgggaaagaaactttctgtgtg
gtagcccataaaagcaatgtacgcctccagaatatcgtgaaacaagcagtttacgatatc
gtgtattcaaattggttattagagtgtttggaaagtaacaagcttttgccatggtcccca
agtcacatgatgcacatgtcaccgaagacgcgggaaaagttcgccttagactatgacgaa
aatggcgacagttataccagagatttaaatgtggcatctttgaaagaaatctttcaaaaa
atcgacgaaaagcaaaacatggtcaagttaacgagagaagaaattgttcaagtagagtca
agatattttccaaattcaccccttggtttatttagacaatacaggttttatgtggatcaa
tacttggaaatcggtgatccccgaacgaaaattcccaactgtagtttggacatacaagcc
gccgaactgcaatactacggcgcacaattaagcgatgaatttgacgaggatgttacacac
gtcattatgaaccccagagacttatcaaggctgccacgaattcaagaggtgtcacgtgag
agatcacggaaagcgcacgtggtcacggcatcgtgggtatcggagagcatagaagccggt
actatattgaaagaaaggaactacggcccatag
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