Dendronephthya gigantea (soft corals): 114528099
Help
Entry
114528099 CDS
T06112
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
dgt
Dendronephthya gigantea (soft corals)
Brite
KEGG Orthology (KO) [BR:
dgt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dgt03019
]
114528099
Enzymes [BR:
dgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
114528099
Messenger RNA biogenesis [BR:
dgt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
114528099
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
T6SS_VasJ
PI-PLC-X
Motif
Other DBs
NCBI-GeneID:
114528099
NCBI-ProteinID:
XP_028405482
LinkDB
All DBs
Position
Unknown
AA seq
1702 aa
AA seq
DB search
MSMSSIPSSSSEEDYDDYDERIRDLEIFIKELQPKMLNLMNEFADAEMFLIDGDSLLMEL
ALEKDLDWTYSGQILHLVYLFERYLHFFVRKDGIFQIIFFKNFENVWKSQPCVYLARKII
LQHLLANVSFKVLFDFESPWDPNFFSYIKKYSPSFMLLSDGEILHEPERQRLIPENALRI
FVLHFLKVLSLEMNCAFTYGIEFGTSTLNGFHIMHSQRFREWKLPTPDGSRVTRAFVSSS
SLTQDIHRAVVSLKSVSSMFNTECQDEVGANDCRLLLHSVTAGVYLKLFSEGPGNQDFHH
DIIRVLFIHGVILTQVSLKYRSFSLDDFKRVFKNTTVESRLKESLGKLQFIMAEVLDVFI
QESKDEDSPRSMKGVCDAWDGRLFYQVLLLLVTSKANGSDLELSDISKRKYESLVKVASS
LLDDEEKLEAFPIIHCLEKHLADSTQVKNVDFKHGVLEMKYVKESKDGLIKMECLLLNEY
AGKILENTSVRKLDIKDPDVAALVVSGNNFDEKYHWHSERPLTDEYKRTAESNNSNQDKY
ARFMQRYGQSLHGEVTYKPIVVKDTTIKSHKKTSKISQKALAIQQDNSQTIEEKELRKEE
NSWTSEKEKVQQYKDEGKLDKALQELDRFLKGVNKRKIKIDVQLTRARILWEMWKDYCHT
NEEDDRDGSRAESLFLTVQDLVENYKEDLSNKNKDTLGEYLDAIGFNNIVVKMNLTTKEF
EANDEYSLRTSSSRFQLHNLGDQLKRESRTDRDNRIDHFIPETWQRKMLDAVDNKQSALI
VAPTSSGKTFASFYCIEQVLKEDNDGVVVYVSPTKALVNQVAATCCVRYKKKMPPGKSVY
GVFTRDFRQNALTCQILVTVPQCLEILLLSPARQDWVEKIRYVVFDEVHCIGSEIGAEVW
EHLLLMIRCPFLALSATIRNPDDLHSWLQNAENDKHYRDTRNNTIRPNAPKSYKVDLITY
NERYNDLEKFNYLPGQSKPMIEHIHPCSVITSRQLKHSGTFPAHVSLSPRETLAFYDAFQ
KVFNEEDSLLRLTPESHFQDETFITKQSVRSYENALKDEFMSYVNNNDKRVEKVIDSLSP
SRAIDWSDSKISKRDALASQIFPLVEELKEKDQLPVIVFSFDRNLCERFAERLIHRLQAK
EEELRKGKAKDKEKQERIKAKLEKRQRDREEEVEVMRKTESSGHDSFHRQKKTTAETACF
LFDNAPSESCSYAGIGVLDDQDAQVIVERLEKSKGISVDEVFKEGLRRGISYHHAGMPGK
QRGVVEMLFRKKFLRVVFATGTLALGIHMPCKTAVFADDSVFLNTLQYHQISGRAGRRGY
DRIGHVLFFGIPQAKIQRLMTVSLPRIIGNFPLNVSLVLRLLLLVNNVKEREIAMSQVLA
LLQNPLICKNQPELDLQLKHHFLFSVELLVRQGLLNEKGHPQGLAGLATHLHYHEPSNFI
LVTFLRDGLFHDICRSARSRDGTFSKDFLKSLVVLLSHLFARRKLHKIVLRRNRSTSKVL
LEDLPAKFKIGLQKYNKKVRDVFDLYLRTVAGHVYDTLGEDVTLPLSRTKLISSESYVVP
SPAVTLEDKLKSIAIPYKACSAFAALSGNSDTKLYSSQDLLSNIRYQVYTDVKVIPTLED
NVDLNAYAYDFFNHGNQKALVNENGLMHGDAYNLVKDFMLVLKSISVSLAELAPDKGDDD
VIRAFTQLAEEYESTFNEAFKR
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatgagcagcatacccagcagttcatccgaagaggattatgatgattatgatgaa
agaatccgcgatctggaaatatttatcaaagaattgcaaccaaaaatgttaaatcttatg
aatgaatttgctgatgcggaaatgtttcttattgatggagactcgttgttaatggaactt
gctttagaaaaggatttagattggacttatagcggtcaaatattgcatctggtatacctt
tttgaacgatacctgcatttctttgtccgtaaagatggcatttttcaaatcatcttcttc
aagaattttgaaaacgtgtggaaatcgcagccatgtgtttaccttgcacgtaaaattatc
ttgcaacatcttcttgcaaatgtcagctttaaggttctgtttgattttgagagtccttgg
gatcctaatttttttagttacataaagaaatattccccatcatttatgcttctttctgat
ggtgaaatcttacatgaacccgaaagacaaagattgattcctgagaatgctcttagaatc
ttcgttcttcattttttgaaagttctcagcttagaaatgaattgtgcgtttacttatggc
atagagtttggtacatccactcttaacggtttccatatcatgcattcccaaagatttaga
gaatggaaactacctacgccagacgggtcccgagtaaccagagcgtttgtatcctctagc
agtttaacacaggacattcatcgtgctgtggtgagtttgaaatccgtctcctccatgttt
aatacagaatgtcaagatgaggttggcgctaatgattgtcgtcttctccttcactcagta
acagctggtgtatatctaaaattatttagtgaaggtcccggaaatcaagattttcaccat
gatatcatccgtgttctgtttattcatggtgtaatactcacacaagtttcattgaagtac
agatcattttctctggatgactttaaacgtgtgtttaagaatacaacggtggagagtcgg
ttgaaagaaagccttggaaaattgcagtttatcatggcagaagttcttgatgtatttatc
caagaatcaaaagatgaagactctcctcggtcgatgaaaggagtatgcgatgcttgggat
ggacggttgttttatcaagttttattgctgttggtaacaagcaaggcgaatggaagtgat
cttgaattgtccgatatttcaaaacgaaagtacgaatctctcgtcaaggttgcatcatct
ttgctagacgatgaggaaaaacttgaagcgtttcctatcatccattgtcttgagaaacac
ttggctgattctacgcaggtaaagaatgtagatttcaaacatggtgtgctagagatgaaa
tacgtgaaggagagtaaagatggtttgatcaaaatggagtgcttgttgttgaatgaatac
gcagggaagattcttgagaatacatcagtaaggaagctcgatataaaggatccagatgtc
gcagctttagttgtgagcggaaataattttgacgagaaatatcattggcattccgaaagg
ccactcactgatgagtataaaagaacagcagagagtaacaacagtaatcaagataaatat
gcaagatttatgcagagatatggacagtcattgcatggtgaagtaacctacaagccaatt
gtcgttaaggatacaacaatcaagagtcacaagaaaacgagcaagatttcacagaaagcc
ctagctattcaacaagataattcccagacgatagaggaaaaggaactgagaaaagaagag
aattcgtggacgagcgagaaagaaaaagttcaacagtacaaagacgaaggaaaacttgac
aaagcacttcaggaactcgatcgctttcttaaaggagtaaacaagcgaaagataaaaatt
gatgtacagctaacgagagcacgaatcttgtgggagatgtggaaggattattgtcataca
aatgaggaagacgatcgagatggaagtagggccgagagtctctttcttacggtacaagat
ttagttgaaaactataaagaagatctctcgaataaaaataaagatactcttggtgagtac
cttgacgcgattggtttcaataatattgtggtgaagatgaatttgacaacaaaggaattc
gaagctaacgatgaatacagtttgagaacatcaagctccagattccaactgcacaacctt
ggcgatcagttaaagagagaatcacggactgatcgggacaatagaattgatcattttatt
cccgaaacatggcaaagaaagatgttggatgcagttgataacaagcagtcagcgttgatt
gtcgcaccaacatcttctgggaaaacatttgcatcgttttattgcattgaacaagtgttg
aaagaggataatgacggtgtcgttgtttacgtctcgccgactaaagctttggtcaatcaa
gttgcagcaacctgttgtgtaagatacaaaaagaaaatgcctccaggaaaaagtgtttat
ggtgtgttcactcgtgattttcgtcaaaacgcccttacatgtcaaattctcgtcacagtt
ccccaatgccttgagattttacttctctcccctgccagacaagattgggttgagaagatc
agatatgttgtatttgatgaagttcattgtattggttcagagattggggctgaggtatgg
gaacatctcttgctcatgattcgctgtccattcctggccttatctgcgactatcaggaat
ccggacgatcttcatagctggttgcaaaatgctgaaaatgataaacattatcgtgacact
agaaacaacacaattcgtccaaatgcaccaaaatcctataaagtcgacctcataacgtac
aacgaaagatataatgatctcgagaagttcaattatctaccaggccagtccaagccgatg
attgagcatattcatccgtgttcagtaataacctctcgtcagctgaagcattcaggtaca
ttccccgcacatgtgagtctttcgccaagagaaactttggctttctacgatgcattccag
aaggttttcaatgaagaggattctttattgagactgactccagagtcccactttcaggat
gaaacattcatcacaaaacaaagcgttagatcgtatgaaaatgctttgaaagatgagttt
atgagctacgtcaacaataatgataagcgagtggaaaaggttattgatagtctatctcca
agtcgtgcgatagattggtcggattcaaaaatatcaaaaagagatgctctcgcttcccag
attttcccacttgtcgaagaattgaaggaaaaagaccaactacctgttatagtttttagt
tttgatcggaatttgtgcgaacggtttgctgagagattaatacatcgcctacaggcaaag
gaggaagagcttcgtaaaggtaaagctaaagataaagaaaaacaagagcgaataaaagca
aaattggaaaaacgacaacgtgatagagaagaggaggtcgaggtgatgcgaaagactgaa
tcatctgggcatgattcgttccatcgtcaaaaaaagacaaccgctgaaacggcatgtttc
ctatttgataatgctccatcagaaagttgtagttacgctgggataggtgttctagatgat
caagatgctcaggtcatcgttgagaggttggaaaaatcgaagggcattagcgttgatgaa
gtctttaaggaaggactaagacgtggaattagttaccatcacgccggaatgccaggcaaa
cagcgtggtgttgtcgaaatgttgtttcgaaagaaatttttaagagttgtgttcgctact
gggacattggcactaggaattcatatgccatgtaagacggccgtgtttgcggacgactcc
gtgtttcttaatactcttcagtatcatcagatctctggtagagcaggacggcgtggttat
gatcggattggacatgtccttttcttcggcatacctcaagcaaagatccagcgtcttatg
acagtcagcctgcctcgtatcattggaaattttcctctgaatgtgtcattggtgttgcgc
ttgcttcttctcgtgaataatgtgaaagaacgtgaaattgctatgagtcaagttttagca
cttcttcagaatccgctgatttgtaagaatcaacctgaacttgatcttcagttgaaacat
cactttctcttcagtgtagaattgttggtacgccagggactgcttaatgagaagggtcat
cctcaaggtttagctggtttggccacccaccttcattatcacgaaccttctaatttcatc
ttggtcacattcttacgtgatggactttttcatgatatatgtcgcagtgctagatcacgt
gatggcacattctccaaagatttcttgaaatccctggtagttttgttaagtcatctgttt
gctcgacgtaaactgcacaaaatagtattacgtcgtaaccgcagcacatctaaagttcta
ctggaagacttaccagcaaagttcaaaattggtcttcagaaatacaacaaaaaagttcgc
gatgtgtttgatctgtacctgcgtacagtggctggtcatgtctacgacactttaggagaa
gatgtcacattaccattatcccgcacaaagctgatttcatctgagagttacgttgttccg
tcaccagcagtaacattagaagataaactaaagtctattgctattccgtataaagcatgt
tctgcgttcgcagcattatctggcaactcagacaccaagctgtatagttcccaggatctt
ctatctaatattcgatatcaggtctacacggatgttaaagttattcccactttggaagat
aatgtagaccttaacgcttacgcatacgatttctttaaccatggcaaccaaaaagcgtta
gtaaacgagaatggtttaatgcatggcgatgcttataatctagttaaagactttatgttg
gttctgaagtccatttctgtctcgctagctgagttggctccagataaaggggatgatgac
gtcatccgagcatttacacagctcgccgaagaatatgaatcaacatttaacgaggctttc
aaacgttga
DBGET
integrated database retrieval system
