Desulfitobacterium hafniense DCB-2: Dhaf_0568
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Entry
Dhaf_0568 CDS
T00822
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dhd
Desulfitobacterium hafniense DCB-2
Pathway
dhd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Dhaf_0568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dhd03400
]
Dhaf_0568
Enzymes [BR:
dhd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Dhaf_0568
DNA repair and recombination proteins [BR:
dhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Dhaf_0568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ACL18634
UniProt:
B8FUY8
LinkDB
All DBs
Position
626708..629164
Genome browser
AA seq
818 aa
AA seq
DB search
MRSKLNQYNQKRNFTRTLEPEGITEMPQEGLRFVVQHHLARRDHYDLRLEWDGAMLSWAV
PKGPSYNTRDKRLAVQVEDHPLEYRHFEGTIPKGEYGGGVVMLWDEGFWEPYVDVDGGLH
EGMLKFVLKGRRLKGRWALVRMKGKAGDKKDNWLLLKEKDDYVQTADGISQFITSIRTGR
TMTEIEEGEEEKFTRNPFSSTEVQLAKLVRHLPEGEGWLYELKYDGYRIVAYLEGHRVRL
MTRNGHDYTERFQDVASSLADWAEGRAMILDGEMAITDPEGKTDFQALQNYLKNPRTKNL
TYILFDLLALDGADLRGHPLIHRKETLAALLENAPPNLHYSRHVRGKGEESFRAACEAGM
EGIIGKKADALYSGTRNGDWIKLKCDQRQEFIIVGYTLSQKRISGISSLLLGIYEGRELV
YAGRAGTGLKESDMEELEEKFKDIRRSSAPFKPAPKPRANERITWVEPELVVEVKFADWT
EENLLRQASFKGLRADKNPREIRRERADEEKDDGELQLQPPAPERKSLMKINTNSMIIEG
IKISSPDKVIFTDPEITKVDMIRYYAKVAERMLPYVSRRILSIVRCPKGVAQTCFYKKHP
GPGSQGVVTIPILTSDGTTEDYFYIENPSGLIAEAQMGTLEFHIWGSRVDELEKPDLMVF
DLDPDEGMELGTVRQGVRDLKTILAELSLNSYLKTSGGKGYHVVVPLKPAVSWGVFHDFA
QGVAQVMEQKWPDRYTSNVRKAKRTNRIFIDWIRNGRGATSIAPYSLRARRGAKVSMPIT
WEELDTVAPDGVDMAEALRRIQDSDPWEGFFRNQQRLQ
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcaaaactcaatcagtacaaccaaaaaaggaatttcaccagaaccttggagccg
gaggggatcacagaaatgccccaggaggggctgaggtttgtagtgcagcaccatctggcc
cgcagagatcactacgatcttcgtctggaatgggatggagccatgttaagctgggcagtg
cccaaggggccttcctacaatacccgggataagagactggctgtacaggtggaggatcat
cctttggaatacaggcattttgaggggaccattcccaaaggggaatacgggggcggtgtg
gtcatgctctgggatgaaggcttctgggaaccttatgtggatgtggatgggggactccat
gaaggtatgctgaagtttgtactgaagggcagaaggcttaaaggcaggtgggctctggta
cggatgaaagggaaagccggggacaagaaggataactggttgttgcttaaagaaaaagac
gactatgtgcaaactgccgacggaatttcccaatttatcaccagcatcaggaccggacgc
accatgacggaaattgaagaaggggaggaggaaaaattcacccgaaaccccttcagcagt
acggaagtgcagcttgccaaattagtccgtcaccttcccgagggtgagggctggctttat
gaattgaagtatgacggctatcggatcgtggcctatcttgaagggcacagggtccggctt
atgaccaggaacggccatgattatacagagcggttccaggatgtggcctcttccctcgct
gattgggctgagggaagggccatgattctggatggggaaatggccattacggatccggag
ggcaagacggactttcaggctttgcagaactatttgaaaaatccccggaccaaaaacctg
acctatatcctctttgatctcctggccctggatggagccgacttgcggggacaccccctg
atccacaggaaggaaaccctggcggccttgctggagaatgctcccccaaaccttcactac
agccggcatgtgaggggaaagggcgaagaaagtttccgggcggcttgtgaagcaggcatg
gaggggattatcggcaaaaaagccgatgccctttacagcggaaccaggaacggcgactgg
atcaagctgaaatgtgatcaaaggcaggaattcatcatcgtcggctatactctttcccag
aaaagaatcagtgggatcagctcccttctcctgggtatttacgaaggccgggaattggtc
tatgccggccgggccggtaccggcctgaaggaaagcgacatggaggaacttgaagagaaa
tttaaggacatcaggagaagttcggcgccctttaaacctgctcctaagcccagagccaat
gaacggatcacctgggtggaacctgaactggtggtggaggttaagtttgccgattggacc
gaagagaatctattgaggcaggccagcttcaaaggcttgcgggcggataagaaccccagg
gagatcaggagggagagggcggatgaggaaaaagatgatggggaactgcagcttcagcca
cctgcccctgaaaggaagagcctcatgaaaatcaataccaacagcatgattatcgaagga
atcaagatcagcagtccggacaaggtgatcttcaccgatcctgaaatcaccaaagtggat
atgatccggtattacgccaaggtggcagagcgcatgctgccctatgtaagccgccggatt
ctcagcattgtccgctgtcccaaaggggtagcccagacctgcttttataagaagcatccc
ggccccggcagtcagggagttgtcactattcccattctcaccagtgacggaacaacagag
gactacttctatattgagaacccttccgggctgatcgccgaagcccaaatgggcactctg
gaatttcacatctgggggagccgtgttgatgagctggaaaagccggatctgatggtcttt
gatctggaccccgacgagggaatggagctgggtacggtgcgccagggtgtgcgggatctg
aaaaccatccttgccgagctttccctgaactcctatctcaagaccagcgggggcaaagga
taccatgtggtggtccccttaaaacccgccgtttcctggggagtctttcatgatttcgcc
caaggcgtcgcccaggtcatggagcagaaatggccggatcgttacacaagcaatgtgcgc
aaggccaagcgcaccaacaggatcttcatcgactggattcgcaacggccggggagccacc
agcattgccccctattccctgagagcaagaaggggagccaaggtatccatgcccatcact
tgggaggagctggatacagtggctcccgacggtgtggatatggcggaggccctgcgcagg
atccaggacagtgatccctgggaagggtttttccggaatcagcagcggcttcagtga
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