Dermatobacter hominis: LH044_17445
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Entry
LH044_17445 CDS
T09351
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dhi
Dermatobacter hominis
Pathway
dhi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LH044_17445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dhi03400
]
LH044_17445
Enzymes [BR:
dhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LH044_17445
DNA repair and recombination proteins [BR:
dhi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LH044_17445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UDY35111
LinkDB
All DBs
Position
3728485..3730077
Genome browser
AA seq
530 aa
AA seq
DB search
MSGGEVADKLGTYRRKRDFSRTSEPSGDAASADAADRRFVVQRHRARRLHYDVRFQIDGV
LVSWSVPKGPSLDPSVRRLAIRTEDHPLEYFSFEGVIPEGEYGGGDVIVWDQGTYDVHGA
GTPADQLADGELHLEVHGEKLRGHFMLVRTKPDRGREQWLMFHKRDDDAVDGWDPEDHPR
SVLSGRTNDEVEADPDATWDSTAAPERAERPLRALRDDDPQLRALDQLGRNGAWEYAGRE
LRVTNLDKVLFPGRDGGEPITKREFIAHWARVAPLLVPLLEDRPVNLHRYPNGVTEPGFW
HKAVPSHAPDWIERWDNPAADPGETQTYVVAAEAATIPWLANFGAIELHPWTSTTAHPDQ
PSWALFDLDPGTATTWDQVLELARLHRTALDHLGVFGLPKVTGSRGIQIWVPIVDGATFD
ETRAWVETVSRTVGRIVPELVSWQWTVRDRKGLARLDYTQNAGNKTLVAPYSTRPAPGAP
VSVPITWDELDDPALRPDRWTIRDLPARLDEVGDLFRDARAHAQRLPRIT
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcggggaggtcgccgacaagctgggcacctaccggcgcaagcgcgacttctca
cgcacgagcgagccgtcgggcgacgcggcctccgccgacgccgccgaccgacgcttcgtc
gtccagcgccaccgggcccggcgcctccactacgacgtccggttccagatcgacggggtc
ctcgtcagctggtcggtgcccaagggcccgtcgctcgacccgtcggtccgccgcctcgcg
atccgcaccgaggaccacccgctcgagtacttctcgttcgagggcgtgatccccgagggc
gagtacggcggaggtgacgtcatcgtgtgggaccagggcacctacgacgtgcacggcgcc
gggacgcccgccgaccagctcgccgacggcgagctccacctcgaggtccacggcgagaag
ctccgggggcacttcatgctcgtccggaccaagccggaccgcgggcgcgagcagtggctg
atgttccacaagcgggacgacgacgccgtcgacggttgggaccccgaggaccacccgcgg
tcggtcctctcgggccgcacgaacgacgaggtcgaggccgatcccgacgccacgtgggac
tcgacggcggcaccggagcgggcggagcgcccgctgcgggcgctgcgcgacgacgacccg
cagctgcgggcgctggaccagctcggcaggaacggcgcgtgggagtacgccggtcgcgag
ctgcgcgtgaccaacctggacaaggtcctcttccccggccgcgacggcggcgagccgatc
accaagcgcgagttcatcgcgcactgggcccgggtcgcgccgctgctcgtcccgctcctc
gaggaccggccggtcaacctgcaccgctacccgaacggcgtgaccgagcccgggttctgg
cacaaggccgtgccctcccacgcgccggactggatcgagcgatgggacaacccggccgcc
gatccgggggagacccagacctacgtggtggcggccgaggcggcgacgatcccgtggctc
gccaacttcggcgccatcgagctgcacccctggacgtcgacgacggcgcacccggaccag
ccgtcctgggccttgttcgacctcgacccgggcaccgcgacgacgtgggaccaggtgctc
gagctggcgcgcctgcaccgcactgcgctcgaccacctcggcgtgttcgggctcccgaag
gtcaccggcagccgcgggatccagatctgggtcccgatcgtggacggcgccaccttcgac
gagacgcgggcctgggtcgagaccgtgtcgcggaccgtgggccgaatcgtcccggagctg
gtcagctggcagtggaccgtcagggaccgcaagggcctggcccgcctcgactacacccag
aacgcggggaacaagacgctggtcgcgccctacagcacccggccggcgccgggcgcgccc
gtgtcggtgccgatcacgtgggacgagctcgacgacccggcgctccggcccgaccggtgg
accatccgcgacctccccgcccgcctcgacgaggtcggcgacctcttccgcgacgcgcgg
gcccacgcccagcgcctcccccggatcacgtga
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