Delftia sp. HK171: BO996_19460
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Entry
BO996_19460 CDS
T04584
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dhk
Delftia sp. HK171
Pathway
dhk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dhk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BO996_19460 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dhk03400
]
BO996_19460 (ligD)
Enzymes [BR:
dhk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BO996_19460 (ligD)
DNA repair and recombination proteins [BR:
dhk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BO996_19460 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
APE49851
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All DBs
Position
4390022..4392637
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AA seq
871 aa
AA seq
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MPATRSKSQASRPARPTKGAAKAATPQASLALYRQKRDFTRTPEPSAESSSEAIAGQPGA
GALQFVIQKHWASHLHYDFRLELDGSMKSWAVPKGPSYDPADKRMAVQVEDHPMAYNRFE
GQIPPGQYGAGKVIIWDRGTWLPEGDAAEGYRKGKLKFELRGHKLQGRWTLVRMRGKDDA
KKPAWLLIKEHDGLERAASEFNLVDDMPDSVAGLPLPTATAPVTTPVATHVTASMPQSIA
PQLATLVDHAPADAGQWIFESKFDGYRLLARIEDGAVRLFTRNGKDWTTKMPALARAFAA
LPLQSGWVDGEVLMLDSDSRPDFQALQNAFDGERTDHLVFFAFDLLWQDGQDLRPQPVEQ
RRQQLQALLHKAPSDRLRFSEAFDAPPADLVAAACQLGLEGVIGKRRGSAYASRRSADWI
KLKCGLRQEFVIAGYTDPQGTRTGLGALVLAVHGKDGQLRAAGKVGTGFNRRTLADLRQR
LERLATGTSPLADSRGLGNGVHWVRPTLLAEVSFAQWTEDGQVRHAVFQGLRADKPARSI
VKEEPQHVPSTASSASAAATPGAARTQTRHARAARLPASMTITHPERVIDPSTGITKMDL
ARYYATVAPFMITHLKSRPVAMVRAPDGIEGELFFQKHLDQAPLQGIAALSPQLDPGHAP
LMEVSRREGLVAAAQMNTIEWHTWNARKDRIDRPDRMTFDLDPGEGVPWQQVQEAASLLH
VLLQELELPAFLKTSGGKGLHVVVPIKRLLDWDTVKAFSQAVVQHLAHAVPQRFVAKSGP
RNRVGKIFVDYLRNGFGATTACAWTARARPGMGISVPVAWNELDRLTGGAHWTIRSVDQR
LRLGNSPWEHYGTAAVGLGRAMKALGFESQR
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgccggccacgcgcagcaagtcccaggcatcccgcccagcccgccccaccaaaggggcg
gccaaggcggcgacaccccaggcctcgctcgcgctgtaccggcaaaagcgcgacttcacg
cgcacaccggaaccttcggcagaatcttccagtgaggcgattgcagggcagcccggcgcg
ggcgccctgcaattcgtcattcaaaagcactgggccagccacctgcactacgactttcgg
ctggagctggacggcagcatgaaaagctgggccgtgcccaagggccccagctacgacccg
gccgacaagcgcatggccgtccaggtggaagaccacccgatggcctacaaccgcttcgag
ggccagattccaccgggacagtacggcgcgggcaaggtcatcatctgggaccgtggcacc
tggctgcccgagggcgatgcggccgaaggctatcgcaagggcaagctcaagttcgaactg
cgcggccacaagctgcagggccgttggaccctggtgcgcatgcgcggcaaggacgacgcc
aaaaagcccgcctggctgctgatcaaggagcacgacggcctggaacgtgctgccagcgaa
ttcaacttggtcgacgacatgcccgacagcgtggccggccttcccctgcccaccgccaca
gcgcccgtcaccacgcccgtcgctacgcacgtcaccgcgtccatgccgcagagcatcgcc
ccgcagctggcaaccttggtggaccatgcacctgcagatgccgggcaatggatcttcgag
agcaagttcgacggctaccggctgctggcgcgcatcgaggacggcgccgttcgccttttc
acgcgcaacggcaaggactggaccaccaaaatgcccgccctggcccgcgcctttgccgca
ctgcccctgcaatcgggctgggtggatggcgaggtgctgatgctggacagcgacagccgc
cctgacttccaggccctgcaaaacgcctttgacggcgagcgcaccgaccacctggtgttc
ttcgcgttcgacctgctgtggcaggacggccaggatctgcggccccagcccgtggagcag
cgccgccagcagttgcaggccctgctgcacaaggcgccttcggaccgccttcgtttcagc
gaggcctttgacgccccgcccgccgacctggtggccgccgcctgccagctgggcctggag
ggcgtgatcggcaagcggcgcggcagcgcctatgcctcgcggcgcagtgcggactggatc
aagctcaagtgcggcctgcgccaggaattcgtgatcgcgggctacaccgatccccagggc
acgcgcacgggcctgggcgccctggtcctggccgtgcatggcaaggacgggcagctgcgc
gcggcaggcaaggtgggcacggggttcaacaggcgcaccctggccgatctgcgccagcgc
ctggagcgccttgccaccggcacctcgccgctggcggacagccggggccttggcaatggg
gtgcactgggtgcgccccacgctgctggccgaggtctcgttcgcgcagtggaccgaggac
ggccaggtccgccatgccgtattccagggcctgcgtgcggacaagcctgcacgcagcatt
gtcaaagaggagccacagcacgtgccatcgaccgcatcttccgccagcgctgcagccacg
cctggcgctgcaagaacgcaaacccgccatgccagggcggcgcgactgcccgcctcgatg
accatcacccatcccgagcgggtcatcgatccctccaccggcatcaccaagatggatctg
gcgcgctactacgccacggtggcgcccttcatgatcacccacctcaagtcccggcccgtg
gccatggtgcgggcgccggacggcatcgagggcgagctgttcttccagaagcacctcgac
caggcgccgctgcagggcatcgccgccctgtcgccgcaactggaccccggccatgccccg
ctgatggaggtgtcccggcgcgaaggcctggtggcggcggcgcagatgaacaccatcgaa
tggcacacctggaacgcgcgcaaggaccgcatcgaccggcccgaccgcatgaccttcgac
ctggaccccggcgaaggcgtgccctggcagcaggtgcaggaggccgccagcctgctgcat
gtgctgctgcaggagctggagctgccggccttcctcaagaccagcggcggcaagggcctg
catgtggtcgtgcccatcaagcggctgctggactgggacaccgtcaaggccttctcgcag
gccgtggtccagcacctggcccatgccgtgccccagcgcttcgtagccaaaagcgggccg
cgcaaccgcgtgggaaagatttttgtggactacctgcgcaacggcttcggcgccaccacg
gcctgcgcgtggacggcccgtgcgcggccgggcatgggcatctccgtgcccgtggcctgg
aacgagctggacaggctcacgggcggcgcgcactggaccattcgctcggtagaccagcgc
ctgcgcctgggcaactccccctgggagcattacggcacggccgccgtgggcctgggccgc
gccatgaaggcgctgggcttcgagtcgcagcgctga
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