Acidovorax ebreus: Dtpsy_1672
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Entry
Dtpsy_1672 CDS
T00853
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dia
Acidovorax ebreus
Pathway
dia03030
DNA replication
dia03410
Base excision repair
dia03420
Nucleotide excision repair
dia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Dtpsy_1672
03410 Base excision repair
Dtpsy_1672
03420 Nucleotide excision repair
Dtpsy_1672
03430 Mismatch repair
Dtpsy_1672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dia03032
]
Dtpsy_1672
03400 DNA repair and recombination proteins [BR:
dia03400
]
Dtpsy_1672
Enzymes [BR:
dia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Dtpsy_1672
DNA replication proteins [BR:
dia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Dtpsy_1672
DNA repair and recombination proteins [BR:
dia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Dtpsy_1672
NER (nucleotide excision repair)
GGR (global genome repair) factors
Dtpsy_1672
MMR (mismatch excision repair)
DNA ligase
Dtpsy_1672
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dtpsy_1672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
ACM33130
UniProt:
B9MIW4
LinkDB
All DBs
Position
1771458..1773680
Genome browser
AA seq
740 aa
AA seq
DB search
MGPGLTLSGMTEQSSLFPAPAPKGSALVAAKIKALREQLNRWAHEYYVQDTPSVPDAEYD
RAFQELQALEGAYPDLVTPDSPTQRVLGAVLDGLTPVRHRVPMLSIRTETDTEASGAQAF
DARVRRELKLPPDAPPVEYVAEPKFDGLAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRT
IRQIPLSLPAGVPRVLEVRGEVYMRRADFDALNERQREKGDKTFVNPRNAAAGAVRQLDS
GITAQRPLSFFAYGLGEVTPAAEGGPDFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIA
FHQRVGAERDALPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGID
VQVGRTGKLTPVARLAPVFVGGVTVTNATLHNLFELRRKKVRVGDQVIVRRAGDVIPEVV
GVVPAGAGLAVLAGSDALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVR
EPGEVNHRCSGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVEGHVIRTLPDLYRL
GLSSLAQLDRMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHFGRLDA
IMDAGVEQLLQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDESEPAAAATLPLA
GMTVVLTGTLPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAGSKLAKAQELGIPV
LDEDGLRALLRGAPPNAGGG
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgggaccgggcctgaccctttccggcatgactgaacaatccagcctttttccggctccc
gcgcccaaggggtctgcgctggtagctgcaaaaatcaaagcgctgcgcgagcagttgaac
cgctgggcgcacgagtactacgtccaggacacgccgagcgtgcccgatgccgagtatgac
cgcgcgttccaggaattgcaggcgctggagggcgcttaccccgacctggtgacgcccgac
tcgcccacgcagcgcgtgctgggcgcggtgctggacgggctgacaccggtgcgccaccgc
gtgcccatgctcagcatccgcaccgaaaccgacaccgaggccagcggcgcccaagccttc
gacgcgcgcgtgcgccgtgaactgaagctgccgcccgatgcgccgccggtggaatacgtg
gccgaacccaagttcgacggcctggcgatgagcctgcgctacgagggcgggcgcctggtg
caggccgccacgcgcggtgacggcgaggtgggcgaggacgtgacgcacaacgtgcgcacc
atccgccagatccccctgagcctgcccgccggcgtgccgcgggtgctggaggtgcgcggg
gaggtctacatgcgccgcgcggacttcgacgcactcaacgagcgccagcgcgagaagggc
gacaagaccttcgtcaacccgcgcaacgccgccgccggcgcggtgcgccagttggactca
ggcatcaccgcgcagcggccgctgtccttcttcgcctacggcctgggcgaggtcacgccg
gccgccgagggcgggcccgacttcggcacgcacttcggcatgctgcagcagctcaaggaa
tggggctttccggttgcagcccaggtgcagattgcgcaaggcgcttctgaactcatagcg
ttccatcagcgtgtgggggccgaacgggacgcgctgccctacgacatcgacggcgtggtc
tacaaggtcaacagcctggcactgcagcgccagctgggctttgtgacgcgcgagccgcgc
tgggccgtggctcacaaatacccggcccaggagatggtcacgcgcgtggaaggtatcgac
gtgcaggtgggccgcacgggcaagctgacccctgtggcgcgactcgcgccggtgttcgtg
ggcggcgtcacggtgaccaatgccacgctgcacaacctgttcgagctgcgccgcaagaaa
gtgcgcgtgggcgaccaggtgatcgtgcgccgcgcgggcgacgtgattcccgaggtggtg
ggcgtggtgccggcgggcgcaggcctggcagtgctggcgggctccgacgcgctggtggac
gccgccagcagcgcggacggcaccgcacccgcgcagccgctggcggggccgcgccagccc
tacgtgcccaacttccgcatgccgcgccagtgccccatctgcggcagcgccgtggtgcgc
gagccgggcgaggtcaaccaccgctgctccggcgggctgttctgccccgcgcagcgcaaa
caggcggtgctgcacttcgcccagcgccgcgccatggacatcgagggcctgggcgagaag
ctggtggaccagctcgtcgagggccacgtgatccgcacgctgcccgacctgtaccggctc
gggctgtccagccttgcgcagctcgaccgcatggccgagaagtccgcgcagaacgtgctg
gatgcgctcgacaaatccaagcgcaccacgctggcgcgctttctcttcggcctgggcatc
cgccatgtgggcgaggccacggccaaggacctggcacgccacttcggccggctcgacgcc
atcatggatgcgggcgtggaacagttgctgcaggtgaacgacgtggggcccgtggtggcc
gaggccatccacaccttcttcgcgcaaccgcacaaccgcgaggtggtggagcagctgcgc
gcctgcggcgtcacctgggacgagagcgagcccgctgccgccgccacgctgcccctggcg
ggcatgaccgtggtgctgaccggcacgctgcccaccttgggccgcgacgcagccaaggac
ctgctggaatccgccggtgccaaggtggcgggctcggtcagcaagaagacgcactacgtg
gtggccggcgccgacgcgggcagcaagctcgccaaggcgcaggaactgggcatccccgtg
ctggacgaggacgggttgcgtgcgttgctgcggggcgcgccgcccaacgcaggtgggggc
tag
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