Dietzia sp. oral taxon 368: C3V38_15630
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Entry
C3V38_15630 CDS
T05390
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dit
Dietzia sp. oral taxon 368
Pathway
dit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V38_15630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dit03019
]
C3V38_15630
03009 Ribosome biogenesis [BR:
dit03009
]
C3V38_15630
Enzymes [BR:
dit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3V38_15630
Messenger RNA biogenesis [BR:
dit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3V38_15630
Ribosome biogenesis [BR:
dit03009
]
Prokaryotic type
rRNA helicases
C3V38_15630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AVM65592
UniProt:
A0A2S0LZA1
LinkDB
All DBs
Position
complement(3342750..3344789)
Genome browser
AA seq
679 aa
AA seq
DB search
MDNNDEDRTATAGDEVDTDASTPETPVAAHAGSRDDAPRDESSAEDAAVTFADMGLAPAV
AKAVRDVGYEVPSAIQAATIPLVLEGRDVVGLAQTGTGKTAAFALPILSLIDPSVKSPQA
LILAPTRELALQVAEACVTYSAGMPQVNVLPIYGGQAYGIQLSGLRRGAQIIVGTPGRVI
DHLKKGTLDLSGLRHLVLDEADEMLAMGFQEDVERILSDTPESTQVALFSATMPSAIRRI
SQQYLTDPTEVKVASKTSTAPTIQQRYVLVNHRDKLDALTRILEVEDFDAMIMFVRTKSA
TEELAERLRARGFSAAPINGDIPQNLRERTIEALKDGRTDILVATDVAARGLDVPRISHV
VNYDIPHDTESYIHRIGRTGRAGRSGHALLFVTPRERRLLSQIERATRQPLTEIQLPSVD
DVNEMRMAKFAQSITESLDDPNIALFRRLVEEYASEHSVSMADIAAALATQSRNSDEFLM
REPERPQRRERQDDRGGDRRDRPARNFSDGPRPSRSGRDMAQYRIAVGKRNNVKPGSIMG
ALANEAGLSGGDIGRISIRFDHSIVELPAGLPSDQLESMKGIRVGGAEIDIRPDSGAPAG
RPSSFRDDRGGKPRGGGHRRDDRGDRGGYSDRRGERHGDRREDKRDNRRDDRGGFRRGDD
DRRGGGGFRGRSGGGQDRY
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggacaacaacgacgaggaccgtaccgccaccgccggcgacgaggtcgacaccgacgcc
agcacgcccgaaacacccgtagccgcgcacgccgggtcccgcgacgacgccccccgcgac
gagtcttccgctgaggatgccgcggtcaccttcgcggacatgggtctcgcgcccgccgtc
gcgaaggcggtccgggacgtcggctacgaagtgccgtccgccatccaggcggccacgatc
cccctcgtcctcgaggggcgggacgtcgtcgggctcgcccagacgggtaccggcaagacg
gccgcgttcgcgttgcccatcctctcgctgatcgacccgtcggtgaagagcccccaggcc
ctcatcctggcgccgacccgcgagctcgcgctccaggtcgccgaggcgtgcgtcacctat
tccgcgggcatgccccaggtgaacgtcctgcccatctacggcggtcaggcctacggtatc
cagctctcgggtctccgccggggcgcgcagatcatcgtcggcactcccgggcgggtcatc
gaccatctcaagaagggcacgctcgatctctccggcctgcggcacctcgtcctcgacgag
gcggacgagatgctcgcgatgggcttccaggaggacgtcgagcggatcctctcggacacc
ccggagagcacccaggtcgccctgttctcggccaccatgccgtccgcgatccgacggatc
tcacagcagtacctcaccgatcccaccgaggtgaaggtcgcctcgaagacgtcgacggcg
ccgaccatccagcagcgctacgtcctggtcaaccaccgtgacaagctcgacgccctgacc
cgcatcctcgaggtcgaggacttcgacgcgatgatcatgttcgtccggaccaagtcggcg
acggaggaactcgccgagcggctgcgcgcacgtggcttctccgccgccccgatcaacggc
gacatcccccagaatctccgcgagcgcaccatcgaggcgctcaaggacgggcgtaccgac
atcctcgtcgcgaccgacgtcgccgcccgcggcctcgacgtgccgcgtatcagccacgtc
gtcaactacgacatcccgcacgacaccgagtcgtacatccaccgcatcggccgcacgggt
cgcgccggccggagcgggcacgcactgctgttcgtcaccccccgcgagcgtcgactgctg
tcccagatcgagcgcgcgacccggcagccgctcacggagatccagctgcccagcgtcgac
gacgtcaacgagatgcggatggccaagttcgcgcagtcgatcaccgagagcctcgacgac
cccaacatcgcgctgttccgccggctcgtggaggagtacgcgtccgagcactcggtctcg
atggccgacatcgcggccgcactggccacccagtcccgcaactcggacgagttcctcatg
cgtgagcccgagcgtccccagcggcgtgagcggcaggacgaccgcgggggcgaccgtcgc
gaccgtcccgcgcggaacttctccgacgggccgcggccgtcgcgctcgggcagggacatg
gcccagtaccggatcgcggtgggcaagcggaacaacgtcaagcccggttccatcatgggt
gcgttggccaacgaggccggcctcagcgggggcgacatcgggcgtatctcgatccgcttc
gatcactcgatcgtggaactgcccgccggccttccctcggatcagctcgagtccatgaag
ggcatccgcgtcggcggcgctgagatcgacatccgacccgacagcggtgcgccggcgggg
cggccctcctcgttccgggacgaccgcggcgggaagccgcgcgggggcggccaccggcgc
gacgatcgcggtgaccgcggcggctactccgaccgtcgcggtgagcggcacggggatcgc
cgggaggacaagcgcgacaaccggcgcgacgaccggggtggtttccgccggggggacgac
gaccgtcgcggcggcggagggttccgcgggcgttccgggggcgggcaggaccgctactga
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