Dyella jiangningensis: CH75_13185
Help
Entry
CH75_13185 CDS
T03074
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dji
Dyella jiangningensis
Pathway
dji03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dji00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CH75_13185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dji03400
]
CH75_13185
Enzymes [BR:
dji01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CH75_13185
DNA repair and recombination proteins [BR:
dji03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CH75_13185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
LcrG
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AHX14043
LinkDB
All DBs
Position
2850217..2853669
Genome browser
AA seq
1150 aa
AA seq
DB search
MAQTIPHPSLPTNPKQRRFWTSPHGSSRALLVAEAARTHQGLLVAVTRDTQRAHALEEEL
RVFAGNLPVLHFPDWETLPYDVFSPHPDIVSQRIATLFQLPNTQRGVLVVPIATLMQRIA
PRSHITGSGLMVKKGQKLDLAHEQRRLEAAGYRNVPQVAEPGDFAVRGALIDIFPMGAAE
PYRIELFDDEIESIRSFDPETQRSQQQVERIELLPAREFPLTENAAKDFRTHLRERFPID
VRRCPLYQDMKEGVTPGGIEYYLPMFFEQTATLFDYLADNAVFLLGESAMESAEQFWTQT
GERYDQRAHDIERPVLPPAELYLQPEQLREQLNKRLRVELVESGHEHAQASGTQPTLELP
LNRKGEEPGTSLRHFLANYPGRVLIAADSAGRREALIEQLASAGLKPDAVDGWAAFIAEG
KSRFAITIASLEQGFALTEPALTVLTERELFGERVRTERKRRRGAARDPESIIRDLTELT
IGAPIVHVDHGVGRYQGLVSMELGGMEGEFLTIEYAKGDKLYVPVAQLGLVSRYTGTAPE
LAPLHSLGGDAWERARRKAAEKVRDVAAELLAIYAQREARGGESLSIDRQLVEEFGASFP
FEETPDQEHAINAVLTDLAAPRAMDRVICGDVGFGKTEVALRAAFAAATAGKQVAVLVPT
TLLAQQHYRNFADRFADWPVRVDVLSRFKSAKEVNEALKRLADGQIDVIVGTHKLLAPEI
KFKNLGLVVVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMSGLRDLSLIAT
PPAHRMAVRTFISTWEPALIREAFQRELQRGGQVYFLHNEVDTIERAAREVEELVPEARI
GVAHGQMPERELERVMADFHRQRFNVLVCTTIIETGIDIPTANTIVINRADRFGLAQLHQ
LRGRVGRSHHRAYAYLVVPDRKAMTADAEKRLEALASLEELGAGFTLATHDLEIRGAGEL
LGDEQSGQIQEIGFGLYTELLERAVRALKSGKVPDFDLSSEHETEVELHLPALIPDDYLP
DVHTRLTLYKRIASARNEDHLRDLQVEMIDRFGLLPDAAKQLFAVAQLKLMATPLGIRKM
DFGANGGRITFRDKPEVEPMAIIRLIQSQPRVYKLDGQDKLKVILELPGASERIRAAQEV
LVQLGARRPG
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggcccaaacgatcccgcatccgtccctgcccaccaaccccaagcagcgtcgcttctgg
acgtcgcctcacggttcttcgcgcgccctgctggtggccgaggccgcacgcacgcatcag
ggcctgctggtcgcggtgacgcgcgacacccagcgcgcccatgcgctggaagaggagctg
cgcgtcttcgccggcaacctccccgtgctgcacttccccgactgggaaacgctgccctac
gacgtgttcagcccgcacccggacattgtctcccagcgcatcgccacgctgttccagctg
ccgaacacgcaacgcggcgtgctggtggtgccgatcgccacgctgatgcagcgcatcgcc
ccgcgcagccacatcaccggcagcgggctgatggtgaaaaagggccagaagctcgacctc
gcccatgagcagcgccggctggaagcggcgggctatcgcaacgtgccgcaggtcgccgag
cccggcgacttcgccgtgcgcggcgcgctgatcgatatcttcccgatgggcgcggccgag
ccgtatcgcatcgagctgttcgacgacgagatcgagtcgatccgcagtttcgacccggaa
acgcagcgctcgcagcagcaggtcgaacgcatcgaactgttgccggcgcgcgagttcccg
ctcaccgaaaacgccgccaaggatttccgcacgcacctgcgcgagcgctttccgatcgac
gtacgccgttgcccgctctaccaggacatgaaggaaggcgtgacgccgggcggcatcgag
tattacctgccgatgttcttcgaacagaccgccacgctgttcgactacctcgccgacaac
gccgtattcctgctgggcgagtccgcgatggaatcggccgaacagttctggactcaaacc
ggcgaacgctacgaccagcgcgcacacgatatcgaacgtccggtattgccgccggcagag
ctgtacctgcagcctgagcagcttcgcgaacaactcaacaagcgccttcgcgtcgaactg
gtcgagagtggccacgagcacgcacaggccagcggcacacagcccacgctcgagcttccg
ctcaaccgcaagggtgaagaacccggcacgtcactacgccacttcctggcgaactatccg
ggacgcgtgctgatcgcagccgactcggcaggccgtcgtgaagccctgatcgaacaattg
gccagcgcaggcctcaagcccgacgcggtggacggctgggccgcgtttatcgcggagggc
aagtcgcgctttgcgatcaccattgcctcgctggaacagggcttcgcgcttaccgaaccg
gcactcaccgtgctcaccgagcgcgaactgttcggcgagcgcgtgcgcaccgagcgcaag
cgtcgtcgtggtgccgcgcgcgatcccgaaagcatcatccgcgacctcaccgagctgacc
atcggcgcgcccatcgtgcacgtcgaccacggcgtgggccgctaccagggcctggtgtcg
atggaactgggcggcatggagggcgagttcctcaccatcgaatacgccaagggcgacaag
ctctacgtgccggtggcgcagctcggccttgtcagccgctacaccggcaccgcacccgaa
cttgcgccgctgcactcgctgggcggcgacgcgtgggaacgtgcgcgacgcaaagccgcc
gaaaaagtgcgcgacgtcgccgcggaattgctggcgatctacgcacagcgcgaagcacgc
ggcggcgaatcgctgtcgatcgaccgccagctcgtggaggaattcggcgccagcttcccg
ttcgaagaaacgcccgaccaggaacacgccatcaacgccgtgctcaccgatctcgccgcg
ccccgcgcgatggatcgcgtgatctgcggcgacgtcggcttcggcaagaccgaagtcgcg
ttgcgtgccgccttcgccgccgccaccgccggcaagcaggtggccgtgctggtgccaacg
accctgctcgcccagcagcactaccgcaatttcgccgaccgcttcgccgactggccggtg
cgcgtggatgtgctgtcgcgcttcaagtcggccaaggaagtgaatgaggcgctcaagcgc
ctggccgacggacagatcgacgtgatcgtgggcacgcacaagctgctcgcgcctgagatc
aagttcaagaacctcggccttgtcgtggtggacgaagagcagcgtttcggcgtgcgccag
aaagagcagctgaagaagctgcgcgccgaagtggacctgctcaccatgacggccacgcca
atcccccgcacgctcaacatggcgatgagcggtctgcgcgatctctcgttgatcgccaca
ccgccggcgcatcgcatggcggtgcgcacgttcatttccacctgggagcctgcgctgatc
cgcgaagccttccagcgcgagctgcaacgcggtggccaggtgtatttcctgcacaacgaa
gtggacaccatcgaacgcgccgcgcgcgaggtggaggaacttgttcccgaggcgcgcatc
ggcgtcgcccatggccagatgcccgagcgcgagctggaacgtgtcatggcggacttccac
cgccagcgtttcaacgtgctggtgtgcaccaccatcatcgagacgggcatcgacatcccg
accgccaacaccatcgtcatcaaccgcgccgaccgcttcggcttggcgcagctccatcag
ctgcgcggccgcgtgggacgttcgcaccatcgcgcctatgcgtatctcgtggtgcccgac
cgcaaggcgatgaccgccgacgcggaaaagcgtcttgaagcgctggcctcgctggaagaa
ctgggcgcgggcttcacgcttgccacgcacgacctggaaatacgtggtgcgggcgagttg
ctgggagacgagcaatccggccagatccaggagatcggcttcggcctctacaccgaactg
ctggagcgcgcggtgcgtgcgctgaagtccggcaaggtgcccgacttcgatctctccagc
gagcacgagaccgaagtggaactgcacctgccggcgctgatccccgacgactatctgccc
gacgtgcatacgcgcctgacgctgtacaagcgcatcgccagcgcgcgcaacgaggatcac
ctgcgtgatctgcaagtggaaatgatcgatcgcttcggcttgctgcccgacgctgccaag
cagctgttcgccgtggcccagctgaagctgatggctacgccgctgggcatccgcaagatg
gacttcggcgccaacggcggacgcatcaccttccgcgacaagccggaagtcgaaccgatg
gcgatcatccgcctgatccagagccagccgcgcgtgtacaagctcgacggccaggacaag
ctgaaggtgatcctggagctgccaggcgccagcgagcgtattcgcgccgcgcaggaagtg
ttggtgcagctgggcgcacgccgccccggctga
DBGET
integrated database retrieval system
