Dermabacter jinjuensis: COP05_06395
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Entry
COP05_06395 CDS
T06191
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
djj
Dermabacter jinjuensis
Pathway
djj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
djj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
COP05_06395 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
djj03400
]
COP05_06395 (mfd)
Enzymes [BR:
djj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
COP05_06395 (mfd)
DNA repair and recombination proteins [BR:
djj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
COP05_06395 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_22
RecG_dom3_C
AA_kinase
Motif
Other DBs
NCBI-ProteinID:
ATH96752
LinkDB
All DBs
Position
complement(1399817..1403485)
Genome browser
AA seq
1222 aa
AA seq
DB search
MSIAPVLAAAAHSADLTRFVEARSTAEGVSIIAPSGMHPLYLAEAASRRGPSDPLVVVTA
TTREAEDLAAQIEALVPAAKVALFPAWETLPHERLSPRSDTVARRLSTLYSLAHPDETGG
VEVLMVPVRALVQPMARGLEDLAPVHLERGDFIAIDELVEKLVGAAYSRVDMVSARGEFA
VRGGIVDVFPPTLSHPVRLDFFGDELEEIRFFSVADQRSMEDTLEAFDAPACREILLTED
VRARARAAIAQLPGAADILSRLAEGIAVEGMESLTPLLVGEMVSLADLLPEHSSLVFVEP
ERIRTRVDELVRTTEEFLEAAWSSAAQGGAVPIDVSQASFSSLEETLGELEARHLPVSTL
APFGLDADLTSQAKPHPGYGGSIANAARDLAQHVSDGWRIVLTTAGAGTGRHIAESLTEA
GVTARFSVDLDEELSRSHVSITTGPITEGILLEDIKLMLLCERDMTGKSAARRSSGKKLA
ARRRAMVDPLQLSPGDYVVHNHHGVGRFVEMTSRTVGTGDKRATREYLVIEYASSKKGQP
GDRLYVPSDQLDQVTKYVGGEAPSVNKMGGSDWSKTKSRARKAIWEIADELVRLYSERQR
SSGFAFSPDTPWQHELEDAFEYTETPDQLSTIDDIKRDMEKPLPMDRLVCGDVGYGKTEV
AVRAAFKAVQDGKQVAVLCPTTLLAQQHVDTFTERYAGFPVNVRGLSRFQTKAESDAVIE
GLKDGSVDVVIGTHRLLTGQVRFKDLGLIIVDEEQRFGVEHKETLKALRTNVDVLSMSAT
PIPRTLEMAVTGIRELSTLATAPEERHPVLTYVGAHEDAQVKAAIRRELLREGQVFYIHN
RVEDIERTAAHLRELVPDARVEVAHGKLNEAQLERVILDFWEKRFDVLVCTTIVETGLDI
SNANTLIVENADRFGLSQLHQLRGRVGRSRDRAYAYFLYPATKPLTETAHDRLTTLATHS
ELGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVGMVGEAVAAFKGEFDHTAKDT
KVELPLNAHIPVEYIDSERLRLEAYSKISASKSADELESVHSELEDRYGAPPAEVERLFH
VARFRLDASEAEIDEVQVQGKMIRFAHVDVTDSVQLKLRRLYPGTVLKPALRQVLVPHPR
TQRVGGIPLTDEALLEFCRGVIAQLKPAWAKERGIELAEQPSEPSRARSFGSRSPRASRL
ENSRRDAPQGTRQAGLGRKGHA
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatcgcccccgttctcgccgccgcggcgcactctgctgatctcacacgcttcgtc
gaagcgcgttccaccgccgagggcgtatcgatcatcgccccgagcggcatgcacccgctt
tatcttgccgaggccgcttcgcgcaggggaccgtcggacccgctcgtcgtggtgaccgca
acgacgcgtgaagcagaagatcttgccgcccagatcgaagctctcgttccggccgcgaag
gttgcgctgttccccgcctgggagacccttccgcacgagaggctttcgccgcgtagcgac
acggtcgcgcgcaggctttccacgctctattcactggcgcatccggacgagacgggtgga
gtcgaggtgcttatggtgcctgtgcgtgcactcgtgcagccgatggcacgcggacttgag
gatctagcgccggttcatctcgagcgcggcgacttcattgcgatcgacgagcttgtggag
aagctcgtcggtgcggcgtactcgcgcgtggacatggtctccgcgcgcggtgagtttgcg
gtgcgtggcggcattgtggacgtgttcccgccgacgctctcgcatcccgtccgcctcgat
tttttcggcgacgagcttgaagagatccgtttcttttccgtcgcggatcagcgctcgatg
gaggacactctcgaagcgttcgatgcacccgcgtgccgtgagattcttctgacggaggac
gtgcgcgcgagagcacgcgccgcgatcgcgcagctgcccggcgccgctgacatcctctcg
cggcttgcggagggcatagccgtcgagggcatggagtcgctgaccccgcttctggtgggg
gagatggtgagcctcgcggacctacttcccgagcattcgagcctcgtgttcgttgagccc
gaacgtattcgcacgcgtgtcgatgagctcgtgcgcacaacggaagagttccttgaggcg
gcgtggtcgagtgcagcgcagggcggtgccgtgccgatcgatgtgtcgcaggcaagcttc
tcgtcgctcgaggagacactcggcgagcttgaggcccgacacctcccggtctccacgctt
gccccgttcgggctcgatgccgacctcacgtctcaggcgaagccgcaccctggatacggc
ggctcgatcgcgaatgcggcgcgggacctcgcgcagcacgttagtgacggatggcgaatc
gtcctcacgaccgccggagcgggtaccgggcgccatatcgccgagtcgctcactgaggcg
ggtgtcacggcgcggttcagcgttgatctcgacgaggagctttcccgctcgcacgtgagt
atcacgacggggccgatcaccgaggggatcctcctcgaggacatcaaactcatgctcttg
tgtgagcgagacatgacggggaaatcggccgctcgccgatctagtggcaagaaacttgcg
gcacgtcgccgcgcgatggtcgatccgctccagctgtcgcccggggactacgtcgttcac
aatcaccacggagtcggccggttcgtggagatgacgagccgcaccgtaggtacgggcgat
aagcgcgcgacccgcgaatacctcgtcatcgagtacgcgagctccaagaagggccagcct
ggtgatcgcctctacgtcccgagcgaccagctcgaccaggtgacgaagtacgtcggaggc
gaggccccgagcgtgaacaagatgggcggaagtgactggtcgaagaccaagtcgcgtgcg
cgcaaggccatctgggaaatcgccgatgaactcgtgaggctctatagcgagcgtcagcgc
agttcgggctttgctttctcgcccgatacgccgtggcaacacgaactcgaggacgccttc
gagtacacggaaactcccgatcagctctcgacgatcgacgacatcaagcgggatatggaa
aaaccacttcccatggatcgcctcgtgtgcggtgacgtcggctacggcaagaccgaagtt
gctgtacgcgcggccttcaaggctgtgcaggatggcaaacaggtggcggtcctatgcccg
acgactcttctcgctcaacagcacgtcgacaccttcacagagcgatacgcgggctttccc
gtcaacgtgcgtgggctttcgcgcttccaaaccaaggctgaatcggacgcggtgatcgag
ggactcaaggacggttcggtcgacgtggtgatcgggacgcatcgcttgctcacggggcag
gtgcgtttcaaggatctggggctcatcatcgtggacgaggagcaacgtttcggtgtcgag
cacaaggagactctcaaagcactgcgcaccaacgtcgatgtgctgtcgatgtcggcgacc
ccgattcccaggactctcgagatggccgtcacgggcatccgcgagctttccactctcgcg
actgcgcccgaggagcgccatcccgtgctcacctacgttggcgcgcacgaggatgcccag
gtcaaggccgcgatccgccgcgaactcttgcgtgaggggcaggtgttctacatccacaac
cgcgtcgaggatattgagcgcaccgccgcgcacttgcgtgagctcgtgcccgatgcacga
gtggaggtcgcccacggcaagcttaacgaggcccaactcgagcgagtcatcctcgatttt
tgggagaagcgcttcgacgtactcgtgtgcacgacgattgtggaaacgggcctcgacatt
tcgaacgcaaataccctgatcgtggagaatgcggacagatttggtctctcgcagcttcac
cagcttcgcggaagggtggggcgctcgcgcgatcgcgcctacgcgtacttcctgtatcca
gcgacgaagccgctcacggaaacagcgcacgaccgcctcacgacgcttgcgacgcactcg
gagctcggtgcaggcatgcaggtcgcgatgaaggacctcgagatccgcggcgcagggaac
ttgctcggcggcgagcagtccgggcacatagccggtgtgggctttgacttgtacgtgggc
atggtcggcgaggcagtcgcagcgttcaagggcgaattcgaccacacggcgaaggacacg
aaggtcgaactgccccttaacgcgcacattcccgtcgagtacatcgattcagagcgcctt
cgcctcgaggcgtactcgaaaatttcggcgtcgaagagtgccgacgaactcgagagcgtg
cactccgagctcgaggaccgttatggcgcgccacccgcggaggtcgagcgtctctttcac
gtcgcgcgcttccgcctggatgcctccgaagctgagatcgacgaggtgcaggtgcagggc
aagatgatccgcttcgcgcacgtggacgtcacggacagcgtgcagctcaagctccgcagg
ttgtatccgggaacggtgctcaagcctgcccttcgccaggttctcgtcccgcatccgcgc
actcagcgtgtcggtggtattcccctcaccgacgaggccctgctcgagttctgccgcggc
gtgattgcacagctgaagcccgcatgggcgaaagaacggggcatcgagcttgccgagcag
ccgtcggaaccctcccgcgcgcgttcgttcggttcgcgatcaccgcgcgcaagtaggctc
gaaaactcgcgccgtgacgcgccgcaagggacgcgccaggcgggtcttggacgaaagggg
catgcgtga
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