Dietzia kunjamensis: NHB83_13430
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Entry
NHB83_13430 CDS
T08346
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dkn
Dietzia kunjamensis
Pathway
dkn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dkn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NHB83_13430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dkn03400
]
NHB83_13430
Enzymes [BR:
dkn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NHB83_13430
DNA repair and recombination proteins [BR:
dkn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NHB83_13430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_OB_2
DUF72
Motif
Other DBs
NCBI-ProteinID:
USX45225
LinkDB
All DBs
Position
2855296..2857953
Genome browser
AA seq
885 aa
AA seq
DB search
MASKGKKESVEVDGRTIRFTHADKVLYEATGTTKSRVLEYYLAVAPLLITYAGRRPVTRK
RWPDGTEDKSFFEKNLPSHAPDWVPRVAIEHSSRTVRYPVLDFPATLAWFAQQAALELHV
PQWTLENDEPGRTRRIVIDLDPGEDVDLDTTAKVALRVRDLLSEAGLDSFPVTSGSKGIH
LYARLDKAVTAASASKVAKQIAQSLAKQTPDLVTATMKRSIREGKVFVDWSQNSGAKTTV
APYSLRGRAEPWVAAPRSWEELGDGGLAHLHWDEVLKRLDSDGDLLDGLEGTAQKKATKK
KSTSSTGSASRAKKSGSGKKSSSSSSDDEDPEPAATASTDDNTTQSTGVEGCNAEPASED
AVVTSLVEYRRKRDRRKTPEPFDGEVETDRDDVDGPIFVIQEHHARRLHFDLRLEHHGVL
ASWAVPKNLPTEPKDRRLAVNTEDHPLGYETFEGTIPKGEYGAGHMTIWDRGWYECEKWR
EDEIIVWLHGDKVSGRYVLVRTSAEKNQWIVQYMKDQSADSFYGGRDNPKSSYPEGDKRA
RSGSGSGGSSGGSGGAASRGSSRDPDSADRPDAPPLPMIPTAATVTELPDDKWAFEGKWD
GYRVTIATSGAGGQARLVSRNGNSMDWLTDGFPGLADALERPAVIDAELVILGSDGVPDF
ASLAKQAAAEGRDSSLPAVELFVFDVLEVDGVDLRTQAWERRREVLDLLAPALTGVDRVH
VPEVLDGPGDRALAEAEEFGWEGIVAKRRDSRYESGRRSKAWLKEKLLTTTEAVVGGWRP
GKGGRSGSLGSLLLGLPAETGLTYIGRVGTGFSDKQARALLEELEPLTRKTSPFVEQLPA
DARRDAIWVLPKLVVEVRHQGFTEDGHMRQSSWRDIRRDKLPGDL
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaagggcaagaaggagtcggttgaggtcgacgggcggaccatccggttcacc
cacgccgacaaggtgctctatgaggccaccggcaccaccaaatcgcgggtcttggagtac
tacctggccgtcgcgccgctgctcatcacgtacgcgggccggcggccggtgacacgcaag
cgctggcccgacggcaccgaggacaagtccttcttcgagaagaaccttccctcccacgcg
cccgactgggtgccgcgcgtggcgatcgagcactcctcgcgcaccgtccgctacccggtg
ctggacttccccgccacgctcgcgtggttcgcgcagcaggccgcgctcgagcttcacgtg
ccgcagtggaccctggagaacgacgagcccggccggacacgacggatagtgatcgacctc
gatccgggcgaggacgtggatctggatacgacggcgaaggtggccctccgcgtccgcgac
ctgctgtccgaggcgggactcgactccttcccggtgacctccgggtccaagggaatccac
ctctacgcccgcctggacaaggccgtcaccgccgccagcgcctccaaggtcgccaagcag
atcgcgcagtcgctcgccaagcagacccccgacctggtcactgccaccatgaagcgctcc
atccgcgaaggcaaggtgttcgtcgactggagccagaacagcggcgccaagaccaccgtc
gccccctactccctgcgcgggcgggccgaaccgtgggtcgccgctccccgctcgtgggag
gaactcggcgacggtggactcgcgcacctgcactgggacgaggtcctcaagcgcctggac
tccgacggcgacctcctcgacgggctcgaaggcacagcccagaagaaggccaccaagaag
aagtcgacctcctccaccggttcggcatcgcgggcgaagaaatcgggaagcggcaagaag
agctcgtcgtcgtcgtccgatgacgaggaccccgagcccgccgccacagcctccaccgac
gacaacaccacgcaatctacgggcgtcgagggctgcaacgccgagcccgccagcgaggac
gccgtggtcaccagcctggtcgaataccggcgcaagcgggatcgtcggaagacgccggag
ccgttcgacggcgaggtcgagaccgatcgcgacgacgtcgacggcccgatcttcgtgatc
caggagcaccacgcccggcgcctgcacttcgacctgcggctcgagcaccacggggtgctg
gcgtcgtgggccgtgcccaagaacctgccgaccgagcccaaggaccggcggctggccgtc
aacaccgaggaccacccgctcggctacgagacgttcgagggcaccatccccaagggcgaa
tacggcgccggccacatgaccatctgggaccgcggctggtacgagtgcgagaaatggcgc
gaggacgagatcatcgtgtggctgcacggcgacaaggtctccggccgctacgtgctcgtg
cgcaccagcgcggagaagaaccagtggatcgtgcagtacatgaaggaccagtcggcggac
tccttctacggcgggcgcgacaaccccaagtcgtcgtatcccgagggcgataagcgggcg
cgatcaggcagtggatccggcggctcatccggcggctcggggggcgcggcgtcccggggc
tcgtcccgcgacccggacagcgccgaccgccccgacgctcccccgctgccgatgatcccc
accgccgccacggtgaccgagctgcccgacgacaagtgggcgttcgagggcaagtgggac
ggctaccgggtgaccatcgcgaccagtggcgccggcgggcaggcgcgcctggtcagccgc
aacggcaactcgatggactggctgaccgacggcttccccgggctggccgacgcactcgaa
cggcccgcggtgatcgacgccgagctggtgatcctgggctccgacggcgtcccggacttc
gcgtcactagcaaagcaggccgcggccgaggggcgggactcgtcgctgcccgccgtcgag
ctgttcgtctttgacgtgctggaggttgacggtgtggacctgcggacgcaggcgtgggag
cggcgccgcgaggtgctggatctgctggccccggcgctgaccggggtggatcgggtgcac
gtaccggaggtgctcgacggccccggcgaccgcgccctggccgaggcggaggagttcggc
tgggagggcatcgtcgccaaacgccgggactctcgctacgagtcgggccggcggtccaag
gcctggctcaaggagaagctgctcaccaccaccgaggccgtggtgggcggctggcggccg
ggcaagggcgggcgctccggctcattgggctcgctgctgctgggcctgcccgccgagacg
ggcctcacctacatcggccgtgtgggcaccggcttctccgacaagcaggcccgcgcgctg
ctcgaggagctcgagccgctaacgcgcaagaccagcccgttcgtcgagcaactgcccgcc
gatgcccgccgcgacgccatctgggtactgcccaagctagttgtggaggtccgtcaccag
ggcttcaccgaggacggtcacatgcgccagtcctcctggcgcgacatccggcgcgacaag
ttgccgggggatttgtag
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