Dokdonella koreensis: I596_2244 Help Entry I596_2244         CDS       T04377                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism dko  Dokdonella koreensis Pathway dko03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:dko00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     I596_2244  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:dko03400]     I596_2244 Enzymes [BR:dko01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      I596_2244 DNA repair and recombination proteins [BR:dko03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      I596_2244 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase Motif Other DBs NCBI-ProteinID:  ANB18256 UniProt:  A0A167GZC4 LinkDB All DBs Position 2580959..2583448 Genome browser AA seq 829 aa AA seqDB search MGLAAYRRKRDFAATPEPAGAGGTRSGARRFVVQLHHASHRHYDFRLELDGVLKSWAVPK GPSLDPASKRLAVEVEDHPIAYAGFAGDIPEGHYGAGHVEVFDTGTWMPSGSARAGLARG ELKFTLHGDVLRGSWVLVRTRRQGKRQHWLLIKHDDAYAGPREADDFVDPTTDRPWPPAR RRVIWRAHATATTAASAATVPLDRLGTAETITHAPFAPELCRSRTSAPTGDGWLHEAKWD GYRILATVVRGTVRLWSRNGLEWTGKIPELADAVRHLGFRSARLDGEMIVLQGARASFNA LQRRLAAASREPACYMLFDLVHADGRSLAGVPLVERKRHLAERLAARPHPLLRYSEHQVG AGAAVFSQALAAGLEGIVSKRVDSGYSGTRSGAWVKVKARPSDEFAVVGYTEPKGSRPGI GALLLAAPDERGRLHYVGRAGTGFDAGQLRDLRRRLAHWQVDRPPAGIERLAHADRALAH WVAPRLIAEVEFQGYGGHGLLRQAAFKTFREDKTVNDLIDQARSPARRTGGTRAARPSRK PAGAEAATLTSPERIVFPEAGLTKREVADYYAAIAPWLLPELAGRPLSVVRCPDGIAKAC FFQKHAGRGWGAHVHTIRIREKDGSDDYLSVDDAAGLLDLVQMNVLEFHPWGSPAGDPDH ASRIVFDLDPGASVAWPRVVAAAREVRRQLAAIGLASFVRTSGGKGLHVVVPVDPPAPWD AAHRFAQGFARALASLHPDELVAVAGAKNRKGKIFVDWLRNGRGATSVASYSLRARPAAG VAMPLSWSELGRVPGGDAFTLRSALQRVRRRRNDPWEAIAGTSQALPPV NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt atggggctggccgcctaccgccgcaagcgcgatttcgccgccacgcccgagccggccggg gcgggcggcacccggtccggggcacgccgcttcgtggtccagctgcatcacgcgtcccac cgccactacgacttccgcctcgaactggacggcgtgctcaagagctgggcggtgccgaaa gggccgagcctggacccggcgtccaagcgactggcggtggaagtggaagaccacccgatc gcctatgccggcttcgcaggcgacattcccgagggccactacggtgccggccatgtcgag gtcttcgacacgggaacctggatgccttcgggcagcgcacgcgccggcctggcgcgcggc gagctgaaattcaccctgcacggcgacgtcctgcgcggctcctgggtactggtgcgcacg cgccggcagggcaagcggcagcactggctgctgatcaagcacgacgacgcctacgcgggc ccgcgcgaagccgacgacttcgtcgatccgaccaccgaccggccatggccgccggcgcgc cggcgcgtgatctggcgcgcacacgcgacggcgaccaccgcggcgtcggcggcgaccgtg cccctcgaccgcctcggcacggccgagacgatcacccacgccccgttcgcaccggaactg tgccggtcccgtaccagcgcgcccaccggcgatggctggctgcacgaggccaaatgggac ggctaccgcatcctggcgaccgtcgtccgcggcacggtgcgcctgtggtcgcgcaacggc ctggagtggaccggcaagatccccgagctcgccgacgcggttcgccacctgggcttccgc agcgcacgcctcgacggcgagatgatcgtcctgcagggcgcgcgtgcgagcttcaatgcg ctgcaacgacggctggccgccgcgtcgcgcgagccggcctgctacatgctgttcgacctg gtccatgccgacgggcgctcgctggcgggcgtgcccctggtcgagcgcaagcggcacctg gccgaacgcctcgccgcccgcccgcacccgttgctgcgctattccgagcaccaggtcggc gccggcgcggccgtgttctcacaggcactcgccgccggcctggagggcatcgtcagcaag cgtgtcgacagcggctacagcggcacgcgcagcggcgcctgggtcaaggtgaaggcgcgc ccctccgacgagttcgccgtggtcggctataccgagccgaaaggcagccgtcccggcatc ggggccctgctgctggccgcgcccgatgagcgaggccggcttcactacgtcggccgcgcc ggcaccggcttcgatgccggccagttgcgcgacctgcgccggcgcctggcgcactggcag gtcgatcggccgccggccggcatcgagcggctggcacacgcagatcgcgcgctggcgcac tgggtcgcgccgcgcctgatcgcggaagtcgagttccagggttacggcggccacggcctg ctgcgccaggcggccttcaagacattccgggaggacaagacagtgaacgatctgatcgac caggcgcggtcgccggcacggcggaccggcggcacccgcgccgcgcgcccgtcgcgcaag ccggccggcgccgaggcagcgaccctgaccagcccggagcgcatcgtgttccccgaagcc ggactgaccaagcgcgaggtcgccgactactacgccgcgatcgcgccgtggctgctgccg gaactggccggccggcccttgtcggtggtgcgctgcccggacggcatcgccaaggcctgc ttcttccagaagcacgccggtcgcggctggggcgcgcacgtccatacgatccggatccgc gagaaggacggcagcgacgactacctgagcgtcgacgacgcggccggcttgctcgacctg gtgcagatgaacgtgctggagttccatccgtggggatcgcccgccggcgaccccgatcat gccagccggatcgtcttcgacctcgatcccggcgcctcggtggcctggccccgcgtcgtc gccgcggcccgcgaggtccggcggcagctggcggcgatcggcctggcctcgttcgtgcgg acctccggcggcaagggcctgcacgtggtggtgccggtcgatccgccggccccctgggac gccgcgcaccgcttcgcccagggcttcgcccgcgcgctggcctcgctgcatccggacgag ctggtggccgtcgccggcgcgaagaaccgcaagggcaagatcttcgtcgactggctgcgc aacggccgcggcgcgaccagcgtcgcctcgtactcgctgcgcgcgcgccccgcggccggc gtcgccatgccgctgtcctggagcgagctgggccgcgttcccggcggcgacgcgttcacg ctgcgcagcgcgctgcagcgcgtgcggcggcgccgcaacgatccctgggaggcgatcgcc ggcacctcgcaggcgctgccgccggtctga

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